Results 61 - 80 of 293 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33276 | 3' | -63.1 | NC_007605.1 | + | 142585 | 0.68 | 0.520315 |
Target: 5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3' miRNA: 3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 142545 | 0.66 | 0.666515 |
Target: 5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3' miRNA: 3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 142483 | 0.68 | 0.520315 |
Target: 5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3' miRNA: 3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 142443 | 0.66 | 0.666515 |
Target: 5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3' miRNA: 3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 142381 | 0.68 | 0.520315 |
Target: 5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3' miRNA: 3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 142341 | 0.66 | 0.666515 |
Target: 5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3' miRNA: 3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 142279 | 0.68 | 0.520315 |
Target: 5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3' miRNA: 3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 142239 | 0.66 | 0.666515 |
Target: 5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3' miRNA: 3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 142177 | 0.68 | 0.520315 |
Target: 5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3' miRNA: 3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 142137 | 0.66 | 0.666515 |
Target: 5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3' miRNA: 3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 142075 | 0.68 | 0.520315 |
Target: 5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3' miRNA: 3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 142035 | 0.66 | 0.666515 |
Target: 5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3' miRNA: 3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 141973 | 0.68 | 0.520315 |
Target: 5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3' miRNA: 3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 141933 | 0.66 | 0.666515 |
Target: 5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3' miRNA: 3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 141872 | 0.68 | 0.520315 |
Target: 5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3' miRNA: 3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 141831 | 0.66 | 0.666515 |
Target: 5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3' miRNA: 3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 141770 | 0.68 | 0.520315 |
Target: 5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3' miRNA: 3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 141729 | 0.66 | 0.666515 |
Target: 5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3' miRNA: 3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 141668 | 0.68 | 0.520315 |
Target: 5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3' miRNA: 3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 141628 | 0.66 | 0.666515 |
Target: 5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3' miRNA: 3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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