Results 81 - 100 of 293 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33276 | 3' | -63.1 | NC_007605.1 | + | 141566 | 0.68 | 0.520315 |
Target: 5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3' miRNA: 3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 141526 | 0.66 | 0.666515 |
Target: 5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3' miRNA: 3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 141464 | 0.68 | 0.520315 |
Target: 5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3' miRNA: 3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 141424 | 0.66 | 0.666515 |
Target: 5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3' miRNA: 3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 141362 | 0.68 | 0.520315 |
Target: 5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3' miRNA: 3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 141322 | 0.66 | 0.666515 |
Target: 5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3' miRNA: 3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 141260 | 0.68 | 0.520315 |
Target: 5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3' miRNA: 3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 141220 | 0.66 | 0.666515 |
Target: 5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3' miRNA: 3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 141158 | 0.68 | 0.520315 |
Target: 5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3' miRNA: 3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 141118 | 0.66 | 0.666515 |
Target: 5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3' miRNA: 3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 141056 | 0.68 | 0.520315 |
Target: 5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3' miRNA: 3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 141016 | 0.66 | 0.666515 |
Target: 5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3' miRNA: 3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 140954 | 0.68 | 0.520315 |
Target: 5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3' miRNA: 3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 140914 | 0.66 | 0.666515 |
Target: 5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3' miRNA: 3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 140853 | 0.68 | 0.520315 |
Target: 5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3' miRNA: 3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 140812 | 0.66 | 0.666515 |
Target: 5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3' miRNA: 3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 137308 | 0.66 | 0.672247 |
Target: 5'- --cGGGGuCCAGaguucccGGCUGCuCCCGCCu -3' miRNA: 3'- ccaCCCC-GGUCgc-----CUGGCGuGGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 136631 | 0.67 | 0.594602 |
Target: 5'- uGGgaaaagGGGGgCAGCgGGGCCGCGuaggguagcggggUCUGCCu -3' miRNA: 3'- -CCa-----CCCCgGUCG-CCUGGCGU-------------GGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 136493 | 0.71 | 0.368202 |
Target: 5'- -cUGGGGCCggAGCGG-UCGCcCCgGCCg -3' miRNA: 3'- ccACCCCGG--UCGCCuGGCGuGGgUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 135286 | 0.71 | 0.383562 |
Target: 5'- uGUGuGGGCgCAGCuuGGACUGCGCagggCGCCg -3' miRNA: 3'- cCAC-CCCG-GUCG--CCUGGCGUGg---GUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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