miRNA display CGI


Results 101 - 120 of 293 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33276 3' -63.1 NC_007605.1 + 133515 0.68 0.54818
Target:  5'- gGGcGGGGCUGGCGcAgaGCGCCCucCCg -3'
miRNA:   3'- -CCaCCCCGGUCGCcUggCGUGGGu-GG- -5'
33276 3' -63.1 NC_007605.1 + 132230 0.72 0.324017
Target:  5'- aGG-GGGGCCAGUGGGuggGCACCUgguagagGCCg -3'
miRNA:   3'- -CCaCCCCGGUCGCCUgg-CGUGGG-------UGG- -5'
33276 3' -63.1 NC_007605.1 + 127309 0.7 0.399341
Target:  5'- --cGGGGCCcGCuucauucacgGGGCCguGCACCUGCCa -3'
miRNA:   3'- ccaCCCCGGuCG----------CCUGG--CGUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 125499 0.71 0.35327
Target:  5'- --gGGGGCCAG-GGACgGUGCCCGg- -3'
miRNA:   3'- ccaCCCCGGUCgCCUGgCGUGGGUgg -5'
33276 3' -63.1 NC_007605.1 + 123324 0.75 0.207785
Target:  5'- -cUGGGGCCAGgGGAguCgGCagguuACCCACCa -3'
miRNA:   3'- ccACCCCGGUCgCCU--GgCG-----UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 122321 0.68 0.529545
Target:  5'- --cGGGGCCAGCuG-CUGCGuaacgucauugUCCACCg -3'
miRNA:   3'- ccaCCCCGGUCGcCuGGCGU-----------GGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 121582 0.66 0.671292
Target:  5'- -cUGGGGUcccgaagCAGCGucCCauugcgcugaGCGCCCACCu -3'
miRNA:   3'- ccACCCCG-------GUCGCcuGG----------CGUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 115450 0.66 0.62431
Target:  5'- --aGGGuGCUcGaccuGGGCCGCGgCCACCg -3'
miRNA:   3'- ccaCCC-CGGuCg---CCUGGCGUgGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 114569 0.68 0.502049
Target:  5'- uGUGGuGGCCAgGUGGACgcaGUGCCCGUCa -3'
miRNA:   3'- cCACC-CCGGU-CGCCUGg--CGUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 105294 0.68 0.549118
Target:  5'- cGGUGaaGGGCCcgcagccagguuugcGCGucCCGCGCCUGCCc -3'
miRNA:   3'- -CCAC--CCCGGu--------------CGCcuGGCGUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 104514 0.67 0.599382
Target:  5'- cGGUGGGGCUgagaccaugcucaguGGCcgucuggcaggGGGCCGgGCgCGCUc -3'
miRNA:   3'- -CCACCCCGG---------------UCG-----------CCUGGCgUGgGUGG- -5'
33276 3' -63.1 NC_007605.1 + 103256 0.66 0.62431
Target:  5'- cGGcgGGGGCUGacgccGCuGGGuuGUugCCGCCg -3'
miRNA:   3'- -CCa-CCCCGGU-----CG-CCUggCGugGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 100667 0.7 0.399341
Target:  5'- ---uGGGCCAGgGGAucgaggaagaccUCGCACuCCACCg -3'
miRNA:   3'- ccacCCCGGUCgCCU------------GGCGUG-GGUGG- -5'
33276 3' -63.1 NC_007605.1 + 100623 0.66 0.643516
Target:  5'- aGGUGuGGGCCGugaGGcCCGgaaGCCCgACCa -3'
miRNA:   3'- -CCAC-CCCGGUcg-CCuGGCg--UGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 98769 0.68 0.537904
Target:  5'- cGUGGGGuCCGGUcuugcagGGACCGgCGCCuCugUc -3'
miRNA:   3'- cCACCCC-GGUCG-------CCUGGC-GUGG-GugG- -5'
33276 3' -63.1 NC_007605.1 + 95172 0.67 0.557575
Target:  5'- --cGGGGUCAcUGGauccucacagGCCGCACCCAgCu -3'
miRNA:   3'- ccaCCCCGGUcGCC----------UGGCGUGGGUgG- -5'
33276 3' -63.1 NC_007605.1 + 95086 0.69 0.466404
Target:  5'- gGGaUGGGGCCGGaggcaGGGCCGaaaACCgaggacgaggaaCACCc -3'
miRNA:   3'- -CC-ACCCCGGUCg----CCUGGCg--UGG------------GUGG- -5'
33276 3' -63.1 NC_007605.1 + 92508 0.7 0.44055
Target:  5'- aGGUGcuGGGC--GUGGACCGCGCggCCAUCa -3'
miRNA:   3'- -CCAC--CCCGguCGCCUGGCGUG--GGUGG- -5'
33276 3' -63.1 NC_007605.1 + 91606 0.68 0.508411
Target:  5'- gGGUGGGGgaauauggguCUcucaucgcucucuuGGUGGACCGCugCUAUCc -3'
miRNA:   3'- -CCACCCC----------GG--------------UCGCCUGGCGugGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 91394 0.68 0.54818
Target:  5'- gGGUGGGaGCCaaagaggcaGGCagGGGCCGguugGCCCACg -3'
miRNA:   3'- -CCACCC-CGG---------UCG--CCUGGCg---UGGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.