Results 61 - 80 of 293 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33276 | 3' | -63.1 | NC_007605.1 | + | 39059 | 0.74 | 0.255179 |
Target: 5'- cGGUGGGuCCGcUGGGCCGCugCC-CCg -3' miRNA: 3'- -CCACCCcGGUcGCCUGGCGugGGuGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 39184 | 0.74 | 0.255179 |
Target: 5'- cGGUGGGuCCGcUGGGCCGCugCC-CCg -3' miRNA: 3'- -CCACCCcGGUcGCCUGGCGugGGuGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 170525 | 0.72 | 0.338771 |
Target: 5'- cGUGGGGCaUGGgGGGCCGCGCauuCCu -3' miRNA: 3'- cCACCCCG-GUCgCCUGGCGUGgguGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 39878 | 0.71 | 0.345966 |
Target: 5'- -cUGGGGCUccucuGGgGGucGCUGCAUCCGCCg -3' miRNA: 3'- ccACCCCGG-----UCgCC--UGGCGUGGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 155262 | 0.71 | 0.356222 |
Target: 5'- uGGUagGaGGGCCAGgagcugucuucacgcCGGACCGagagguCGCCCACCu -3' miRNA: 3'- -CCA--C-CCCGGUC---------------GCCUGGC------GUGGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 136493 | 0.71 | 0.368202 |
Target: 5'- -cUGGGGCCggAGCGG-UCGCcCCgGCCg -3' miRNA: 3'- ccACCCCGG--UCGCCuGGCGuGGgUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 160008 | 0.71 | 0.375829 |
Target: 5'- ---cGGGCCcG-GGACCGCGCCCuCCu -3' miRNA: 3'- ccacCCCGGuCgCCUGGCGUGGGuGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 40413 | 0.7 | 0.3914 |
Target: 5'- ---cGGGCCGGCugggaGGugUGCACCCcCCg -3' miRNA: 3'- ccacCCCGGUCG-----CCugGCGUGGGuGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 143228 | 0.7 | 0.3914 |
Target: 5'- ---cGGGCCGGCugggaGGugUGCACCCcCCg -3' miRNA: 3'- ccacCCCGGUCG-----CCugGCGUGGGuGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 12323 | 0.7 | 0.396153 |
Target: 5'- aGGUuGGaGCCAGCGGGCacccgaggucccaGCACCCGguCCc -3' miRNA: 3'- -CCAcCC-CGGUCGCCUGg------------CGUGGGU--GG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 63327 | 0.72 | 0.324709 |
Target: 5'- aGGUgGGGGCCugacGCGGAUgGCcaACCUGCUg -3' miRNA: 3'- -CCA-CCCCGGu---CGCCUGgCG--UGGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 132230 | 0.72 | 0.324017 |
Target: 5'- aGG-GGGGCCAGUGGGuggGCACCUgguagagGCCg -3' miRNA: 3'- -CCaCCCCGGUCGCCUgg-CGUGGG-------UGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 39309 | 0.74 | 0.255179 |
Target: 5'- cGGUGGGuCCGcUGGGCCGCugCC-CCg -3' miRNA: 3'- -CCACCCcGGUcGCCUGGCGugGGuGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 39434 | 0.74 | 0.255179 |
Target: 5'- cGGUGGGuCCGcUGGGCCGCugCC-CCg -3' miRNA: 3'- -CCACCCcGGUcGCCUGGCGugGGuGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 39559 | 0.74 | 0.255179 |
Target: 5'- cGGUGGGuCCGcUGGGCCGCugCC-CCg -3' miRNA: 3'- -CCACCCcGGUcGCCUGGCGugGGuGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 39684 | 0.74 | 0.255179 |
Target: 5'- cGGUGGGuCCGcUGGGCCGCugCC-CCg -3' miRNA: 3'- -CCACCCcGGUcGCCUGGCGugGGuGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 50355 | 0.73 | 0.289567 |
Target: 5'- cGGcGGGGCCgcGGUGGGCUgcccccgaggacggGCGCCgGCCg -3' miRNA: 3'- -CCaCCCCGG--UCGCCUGG--------------CGUGGgUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 162795 | 0.72 | 0.304439 |
Target: 5'- -aUGGGaCUGGCGG-CCGCcCCCGCCa -3' miRNA: 3'- ccACCCcGGUCGCCuGGCGuGGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 48464 | 0.72 | 0.317842 |
Target: 5'- --gGGGGCCGGgGGGCC-CugCCugaGCCg -3' miRNA: 3'- ccaCCCCGGUCgCCUGGcGugGG---UGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 69520 | 0.72 | 0.317842 |
Target: 5'- uGUGGGGCgauggccucCGGgGGGCUGUACCUggGCCa -3' miRNA: 3'- cCACCCCG---------GUCgCCUGGCGUGGG--UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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