miRNA display CGI


Results 101 - 120 of 293 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33276 3' -63.1 NC_007605.1 + 62373 0.69 0.457697
Target:  5'- aGGUGgccguuGGGCCAGa-GACCGCGagcaccucCCCGCUg -3'
miRNA:   3'- -CCAC------CCCGGUCgcCUGGCGU--------GGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 50409 0.69 0.457697
Target:  5'- cGUGGccuuuGGCa--CGGGCCugGCACCCACCg -3'
miRNA:   3'- cCACC-----CCGgucGCCUGG--CGUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 61099 0.69 0.457697
Target:  5'- --aGGGGCUguggacauaGGcCGGAuCCGCGCgCGCCg -3'
miRNA:   3'- ccaCCCCGG---------UC-GCCU-GGCGUGgGUGG- -5'
33276 3' -63.1 NC_007605.1 + 5002 0.69 0.481399
Target:  5'- -aUGGGGCCAGgGacucugcccuggcaGGCCGUG-CCACCg -3'
miRNA:   3'- ccACCCCGGUCgC--------------CUGGCGUgGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 40091 0.69 0.484069
Target:  5'- gGGUGGGu---GCGGuCCGCuggcCCCACCc -3'
miRNA:   3'- -CCACCCcgguCGCCuGGCGu---GGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 33806 0.7 0.396153
Target:  5'- aGGUuGGaGCCAGCGGGCacccgaggucccaGCACCCGguCCc -3'
miRNA:   3'- -CCAcCC-CGGUCGCCUGg------------CGUGGGU--GG- -5'
33276 3' -63.1 NC_007605.1 + 30737 0.7 0.396153
Target:  5'- aGGUuGGaGCCAGCGGGCacccgaggucccaGCACCCGguCCc -3'
miRNA:   3'- -CCAcCC-CGGUCGCCUGg------------CGUGGGU--GG- -5'
33276 3' -63.1 NC_007605.1 + 170525 0.72 0.338771
Target:  5'- cGUGGGGCaUGGgGGGCCGCGCauuCCu -3'
miRNA:   3'- cCACCCCG-GUCgCCUGGCGUGgguGG- -5'
33276 3' -63.1 NC_007605.1 + 39878 0.71 0.345966
Target:  5'- -cUGGGGCUccucuGGgGGucGCUGCAUCCGCCg -3'
miRNA:   3'- ccACCCCGG-----UCgCC--UGGCGUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 155262 0.71 0.356222
Target:  5'- uGGUagGaGGGCCAGgagcugucuucacgcCGGACCGagagguCGCCCACCu -3'
miRNA:   3'- -CCA--C-CCCGGUC---------------GCCUGGC------GUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 136493 0.71 0.368202
Target:  5'- -cUGGGGCCggAGCGG-UCGCcCCgGCCg -3'
miRNA:   3'- ccACCCCGG--UCGCCuGGCGuGGgUGG- -5'
33276 3' -63.1 NC_007605.1 + 160008 0.71 0.375829
Target:  5'- ---cGGGCCcG-GGACCGCGCCCuCCu -3'
miRNA:   3'- ccacCCCGGuCgCCUGGCGUGGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 40413 0.7 0.3914
Target:  5'- ---cGGGCCGGCugggaGGugUGCACCCcCCg -3'
miRNA:   3'- ccacCCCGGUCG-----CCugGCGUGGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 143228 0.7 0.3914
Target:  5'- ---cGGGCCGGCugggaGGugUGCACCCcCCg -3'
miRNA:   3'- ccacCCCGGUCG-----CCugGCGUGGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 12323 0.7 0.396153
Target:  5'- aGGUuGGaGCCAGCGGGCacccgaggucccaGCACCCGguCCc -3'
miRNA:   3'- -CCAcCC-CGGUCGCCUGg------------CGUGGGU--GG- -5'
33276 3' -63.1 NC_007605.1 + 15392 0.7 0.396153
Target:  5'- aGGUuGGaGCCAGCGGGCacccgaggucccaGCACCCGguCCc -3'
miRNA:   3'- -CCAcCC-CGGUCGCCUGg------------CGUGGGU--GG- -5'
33276 3' -63.1 NC_007605.1 + 18461 0.7 0.396153
Target:  5'- aGGUuGGaGCCAGCGGGCacccgaggucccaGCACCCGguCCc -3'
miRNA:   3'- -CCAcCC-CGGUCGCCUGg------------CGUGGGU--GG- -5'
33276 3' -63.1 NC_007605.1 + 21530 0.7 0.396153
Target:  5'- aGGUuGGaGCCAGCGGGCacccgaggucccaGCACCCGguCCc -3'
miRNA:   3'- -CCAcCC-CGGUCGCCUGg------------CGUGGGU--GG- -5'
33276 3' -63.1 NC_007605.1 + 24599 0.7 0.396153
Target:  5'- aGGUuGGaGCCAGCGGGCacccgaggucccaGCACCCGguCCc -3'
miRNA:   3'- -CCAcCC-CGGUCGCCUGg------------CGUGGGU--GG- -5'
33276 3' -63.1 NC_007605.1 + 27668 0.7 0.396153
Target:  5'- aGGUuGGaGCCAGCGGGCacccgaggucccaGCACCCGguCCc -3'
miRNA:   3'- -CCAcCC-CGGUCGCCUGg------------CGUGGGU--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.