miRNA display CGI


Results 41 - 60 of 293 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33276 3' -63.1 NC_007605.1 + 50732 0.68 0.502049
Target:  5'- -cUGGGGuCCGGCuuGGCCGC-CCCGgCg -3'
miRNA:   3'- ccACCCC-GGUCGc-CUGGCGuGGGUgG- -5'
33276 3' -63.1 NC_007605.1 + 39131 0.71 0.345966
Target:  5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3'
miRNA:   3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 40008 0.78 0.142209
Target:  5'- gGGcUGGGGuCCAGgGGACCacGCcCCCACCc -3'
miRNA:   3'- -CC-ACCCC-GGUCgCCUGG--CGuGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 95086 0.69 0.466404
Target:  5'- gGGaUGGGGCCGGaggcaGGGCCGaaaACCgaggacgaggaaCACCc -3'
miRNA:   3'- -CC-ACCCCGGUCg----CCUGGCg--UGG------------GUGG- -5'
33276 3' -63.1 NC_007605.1 + 159856 0.78 0.135489
Target:  5'- cGGUGgaGGGCUgaaGGCGGACUGCGCCgcCGCCu -3'
miRNA:   3'- -CCAC--CCCGG---UCGCCUGGCGUGG--GUGG- -5'
33276 3' -63.1 NC_007605.1 + 141158 0.68 0.520315
Target:  5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 171311 0.75 0.217614
Target:  5'- cGGgGGGGCUGGgGGGCCGCgggggaagGCCaCGCCc -3'
miRNA:   3'- -CCaCCCCGGUCgCCUGGCG--------UGG-GUGG- -5'
33276 3' -63.1 NC_007605.1 + 141464 0.68 0.520315
Target:  5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 141770 0.68 0.520315
Target:  5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 142279 0.68 0.520315
Target:  5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 142585 0.68 0.520315
Target:  5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 143094 0.68 0.520315
Target:  5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 142890 0.68 0.510235
Target:  5'- --cGGGGCagcgaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG-------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 92508 0.7 0.44055
Target:  5'- aGGUGcuGGGC--GUGGACCGCGCggCCAUCa -3'
miRNA:   3'- -CCAC--CCCGguCGCCUGGCGUG--GGUGG- -5'
33276 3' -63.1 NC_007605.1 + 50552 0.7 0.399341
Target:  5'- --cGGGGgCAGCccACCGCGgcCCCGCCg -3'
miRNA:   3'- ccaCCCCgGUCGccUGGCGU--GGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 38507 0.71 0.345966
Target:  5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3'
miRNA:   3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 38882 0.71 0.345966
Target:  5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3'
miRNA:   3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39506 0.71 0.345966
Target:  5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3'
miRNA:   3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39881 0.71 0.345966
Target:  5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3'
miRNA:   3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 169714 0.75 0.217614
Target:  5'- cGGgGGGGCUGGgGGGCCGCgggggaagGCCaCGCCc -3'
miRNA:   3'- -CCaCCCCGGUCgCCUGGCG--------UGG-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.