miRNA display CGI


Results 61 - 80 of 293 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33276 3' -63.1 NC_007605.1 + 142890 0.68 0.510235
Target:  5'- --cGGGGCagcgaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG-------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 142789 0.68 0.520315
Target:  5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 170774 0.75 0.217614
Target:  5'- cGGgGGGGCUGGgGGGCCGCgggggaagGCCaCGCCc -3'
miRNA:   3'- -CCaCCCCGGUCgCCUGGCG--------UGG-GUGG- -5'
33276 3' -63.1 NC_007605.1 + 50905 0.74 0.2331
Target:  5'- aGG-GGGGCCGggaagaagccGCGGAgauucggcccuCCGcCACCCGCCu -3'
miRNA:   3'- -CCaCCCCGGU----------CGCCU-----------GGC-GUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39756 0.71 0.345966
Target:  5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3'
miRNA:   3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39381 0.71 0.345966
Target:  5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3'
miRNA:   3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 38757 0.71 0.345966
Target:  5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3'
miRNA:   3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 125499 0.71 0.35327
Target:  5'- --gGGGGCCAG-GGACgGUGCCCGg- -3'
miRNA:   3'- ccaCCCCGGUCgCCUGgCGUGGGUgg -5'
33276 3' -63.1 NC_007605.1 + 170828 0.7 0.406576
Target:  5'- ---cGGGCCcGCGGaccccgaccccccGCCGCccGCCCGCCg -3'
miRNA:   3'- ccacCCCGGuCGCC-------------UGGCG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 60955 0.69 0.449078
Target:  5'- aGGgcgGGGGCCccuGgGGGCUGUcguCCCACg -3'
miRNA:   3'- -CCa--CCCCGGu--CgCCUGGCGu--GGGUGg -5'
33276 3' -63.1 NC_007605.1 + 30994 0.67 0.56607
Target:  5'- --cGGGGCCAGCugccgggGGGCC-CugCCugUc -3'
miRNA:   3'- ccaCCCCGGUCG-------CCUGGcGugGGugG- -5'
33276 3' -63.1 NC_007605.1 + 73767 0.67 0.557575
Target:  5'- --aGGGGCUuuGCGGAgcacaugCGCACCUACUu -3'
miRNA:   3'- ccaCCCCGGu-CGCCUg------GCGUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 142381 0.68 0.520315
Target:  5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 142075 0.68 0.520315
Target:  5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 141464 0.68 0.520315
Target:  5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 141158 0.68 0.520315
Target:  5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 34840 0.68 0.528619
Target:  5'- cGGUGGGGCUGGacuugaGGGCCcaaagagGC-CCCucuCCg -3'
miRNA:   3'- -CCACCCCGGUCg-----CCUGG-------CGuGGGu--GG- -5'
33276 3' -63.1 NC_007605.1 + 25633 0.68 0.528619
Target:  5'- cGGUGGGGCUGGacuugaGGGCCcaaagagGC-CCCucuCCg -3'
miRNA:   3'- -CCACCCCGGUCg-----CCUGG-------CGuGGGu--GG- -5'
33276 3' -63.1 NC_007605.1 + 63252 0.68 0.529545
Target:  5'- --cGGGGCCAGCaGcCCuGCGCgccagacggCCGCCg -3'
miRNA:   3'- ccaCCCCGGUCGcCuGG-CGUG---------GGUGG- -5'
33276 3' -63.1 NC_007605.1 + 20154 0.68 0.54818
Target:  5'- --aGGGGCgGGaggGGGCUGgGCCuCACCu -3'
miRNA:   3'- ccaCCCCGgUCg--CCUGGCgUGG-GUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.