Results 81 - 100 of 293 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33276 | 3' | -63.1 | NC_007605.1 | + | 142177 | 0.68 | 0.520315 |
Target: 5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3' miRNA: 3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 141668 | 0.68 | 0.520315 |
Target: 5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3' miRNA: 3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 141362 | 0.68 | 0.520315 |
Target: 5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3' miRNA: 3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 140954 | 0.68 | 0.520315 |
Target: 5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3' miRNA: 3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 31771 | 0.68 | 0.528619 |
Target: 5'- cGGUGGGGCUGGacuugaGGGCCcaaagagGC-CCCucuCCg -3' miRNA: 3'- -CCACCCCGGUCg-----CCUGG-------CGuGGGu--GG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 63252 | 0.68 | 0.529545 |
Target: 5'- --cGGGGCCAGCaGcCCuGCGCgccagacggCCGCCg -3' miRNA: 3'- ccaCCCCGGUCGcCuGG-CGUG---------GGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 20154 | 0.68 | 0.54818 |
Target: 5'- --aGGGGCgGGaggGGGCUGgGCCuCACCu -3' miRNA: 3'- ccaCCCCGgUCg--CCUGGCgUGG-GUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 60955 | 0.69 | 0.449078 |
Target: 5'- aGGgcgGGGGCCccuGgGGGCUGUcguCCCACg -3' miRNA: 3'- -CCa--CCCCGGu--CgCCUGGCGu--GGGUGg -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 170828 | 0.7 | 0.406576 |
Target: 5'- ---cGGGCCcGCGGaccccgaccccccGCCGCccGCCCGCCg -3' miRNA: 3'- ccacCCCGGuCGCC-------------UGGCG--UGGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 125499 | 0.71 | 0.35327 |
Target: 5'- --gGGGGCCAG-GGACgGUGCCCGg- -3' miRNA: 3'- ccaCCCCGGUCgCCUGgCGUGGGUgg -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 15649 | 0.67 | 0.56607 |
Target: 5'- --cGGGGCCAGCugccgggGGGCC-CugCCugUc -3' miRNA: 3'- ccaCCCCGGUCG-------CCUGGcGugGGugG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 29361 | 0.67 | 0.586013 |
Target: 5'- --aGGGGCgGGaggGGGCUGgGCCuCACCc -3' miRNA: 3'- ccaCCCCGgUCg--CCUGGCgUGG-GUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 17086 | 0.67 | 0.586013 |
Target: 5'- --aGGGGCgGGaggGGGCUGgGCCuCACCc -3' miRNA: 3'- ccaCCCCGgUCg--CCUGGCgUGG-GUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 136631 | 0.67 | 0.594602 |
Target: 5'- uGGgaaaagGGGGgCAGCgGGGCCGCGuaggguagcggggUCUGCCu -3' miRNA: 3'- -CCa-----CCCCgGUCG-CCUGGCGU-------------GGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 61601 | 0.67 | 0.602253 |
Target: 5'- uGUGGGGgCGGCGGcggacccuugggacGCCGUaACCC-CUc -3' miRNA: 3'- cCACCCCgGUCGCC--------------UGGCG-UGGGuGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 170774 | 0.75 | 0.217614 |
Target: 5'- cGGgGGGGCUGGgGGGCCGCgggggaagGCCaCGCCc -3' miRNA: 3'- -CCaCCCCGGUCgCCUGGCG--------UGG-GUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 50905 | 0.74 | 0.2331 |
Target: 5'- aGG-GGGGCCGggaagaagccGCGGAgauucggcccuCCGcCACCCGCCu -3' miRNA: 3'- -CCaCCCCGGU----------CGCCU-----------GGC-GUGGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 39756 | 0.71 | 0.345966 |
Target: 5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3' miRNA: 3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 39381 | 0.71 | 0.345966 |
Target: 5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3' miRNA: 3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 38757 | 0.71 | 0.345966 |
Target: 5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3' miRNA: 3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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