miRNA display CGI


Results 41 - 60 of 293 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33276 3' -63.1 NC_007605.1 + 19289 0.66 0.662689
Target:  5'- --aGGGGCCucuuUGGGCCcucaaguccaGC-CCCACCg -3'
miRNA:   3'- ccaCCCCGGuc--GCCUGG----------CGuGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 31565 0.66 0.662689
Target:  5'- --aGGGGCCucuuUGGGCCcucaaguccaGC-CCCACCg -3'
miRNA:   3'- ccaCCCCGGuc--GCCUGG----------CGuGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 25427 0.66 0.662689
Target:  5'- --aGGGGCCucuuUGGGCCcucaaguccaGC-CCCACCg -3'
miRNA:   3'- ccaCCCCGGuc--GCCUGG----------CGuGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 13151 0.66 0.662689
Target:  5'- --aGGGGCCucuuUGGGCCcucaaguccaGC-CCCACCg -3'
miRNA:   3'- ccaCCCCGGuc--GCCUGG----------CGuGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 169769 0.66 0.661732
Target:  5'- --cGGaGCCcGCGGaccccgaccccccGCCGCccGCCCGCCg -3'
miRNA:   3'- ccaCCcCGGuCGCC-------------UGGCG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 171366 0.66 0.661732
Target:  5'- --cGGaGCCcGCGGaccccgaccccccGCCGCccGCCCGCCg -3'
miRNA:   3'- ccaCCcCGGuCGCC-------------UGGCG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 170306 0.66 0.661732
Target:  5'- --cGGaGCCcGCGGaccccgaccccccGCCGCccGCCCGCCg -3'
miRNA:   3'- ccaCCcCGGuCGCC-------------UGGCG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 61067 0.66 0.654068
Target:  5'- --cGGGGCCccuccgaugccugggAGUccccccaggcggucGGACUGCGCCC-CCu -3'
miRNA:   3'- ccaCCCCGG---------------UCG--------------CCUGGCGUGGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 61181 0.66 0.65311
Target:  5'- --cGGGGCCGcCGccACCGCugCCGuCCa -3'
miRNA:   3'- ccaCCCCGGUcGCc-UGGCGugGGU-GG- -5'
33276 3' -63.1 NC_007605.1 + 2859 0.66 0.65311
Target:  5'- --cGGGGCCGGUGG-CgGUcugguaguaccaGCCCAgCg -3'
miRNA:   3'- ccaCCCCGGUCGCCuGgCG------------UGGGUgG- -5'
33276 3' -63.1 NC_007605.1 + 49724 0.66 0.65311
Target:  5'- --gGGGGUC-GCGGACUGgGCUacgGCCg -3'
miRNA:   3'- ccaCCCCGGuCGCCUGGCgUGGg--UGG- -5'
33276 3' -63.1 NC_007605.1 + 159320 0.66 0.652151
Target:  5'- --cGGGGCCccuggcggaggagAGCGGGCUcuuuCcCCCACCc -3'
miRNA:   3'- ccaCCCCGG-------------UCGCCUGGc---GuGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 164054 0.66 0.647355
Target:  5'- gGGUaGGuGGCCAGgGGguaaaaguagauguaGCCGCACggACCc -3'
miRNA:   3'- -CCA-CC-CCGGUCgCC---------------UGGCGUGggUGG- -5'
33276 3' -63.1 NC_007605.1 + 3249 0.66 0.643516
Target:  5'- -cUGGGGcCCGGgGGGCgCGCguaGCCCgagaugcacgggGCCg -3'
miRNA:   3'- ccACCCC-GGUCgCCUG-GCG---UGGG------------UGG- -5'
33276 3' -63.1 NC_007605.1 + 100623 0.66 0.643516
Target:  5'- aGGUGuGGGCCGugaGGcCCGgaaGCCCgACCa -3'
miRNA:   3'- -CCAC-CCCGGUcg-CCuGGCg--UGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 169639 0.66 0.643516
Target:  5'- cGGgGGGGUCGGgGGGCgccgccgggCGCAgCCAUg -3'
miRNA:   3'- -CCaCCCCGGUCgCCUG---------GCGUgGGUGg -5'
33276 3' -63.1 NC_007605.1 + 39090 0.66 0.633914
Target:  5'- gGGUGGGG--GGUGGccccgcugggcACCGCuGCgCCGCCg -3'
miRNA:   3'- -CCACCCCggUCGCC-----------UGGCG-UG-GGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39340 0.66 0.633914
Target:  5'- gGGUGGGG--GGUGGccccgcugggcACCGCuGCgCCGCCg -3'
miRNA:   3'- -CCACCCCggUCGCC-----------UGGCG-UG-GGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39465 0.66 0.633914
Target:  5'- gGGUGGGG--GGUGGccccgcugggcACCGCuGCgCCGCCg -3'
miRNA:   3'- -CCACCCCggUCGCC-----------UGGCG-UG-GGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39590 0.66 0.633914
Target:  5'- gGGUGGGG--GGUGGccccgcugggcACCGCuGCgCCGCCg -3'
miRNA:   3'- -CCACCCCggUCGCC-----------UGGCG-UG-GGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.