Results 41 - 60 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33277 | 3' | -54.6 | NC_007605.1 | + | 20542 | 0.67 | 0.929749 |
Target: 5'- gGGGUcuUCUACCUCUcccuAGccCUCCGCCCc -3' miRNA: 3'- aCCUAu-GGAUGGAGA----UCc-GAGGUGGG- -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 17473 | 0.67 | 0.929749 |
Target: 5'- gGGGUcuUCUACCUCUcccuAGccCUCCGCCCc -3' miRNA: 3'- aCCUAu-GGAUGGAGA----UCc-GAGGUGGG- -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 14404 | 0.67 | 0.929749 |
Target: 5'- gGGGUcuUCUACCUCUcccuAGccCUCCGCCCc -3' miRNA: 3'- aCCUAu-GGAUGGAGA----UCc-GAGGUGGG- -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 97369 | 0.68 | 0.900726 |
Target: 5'- aUGGAguagAUUUGCCUCccuGGuUUCCACCUa -3' miRNA: 3'- -ACCUa---UGGAUGGAGau-CC-GAGGUGGG- -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 133703 | 0.68 | 0.880494 |
Target: 5'- cGGugGCCUACCUgCUacuccagggGGGCUCuCACaCCa -3' miRNA: 3'- aCCuaUGGAUGGA-GA---------UCCGAG-GUG-GG- -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 76688 | 0.68 | 0.878359 |
Target: 5'- gGGGUGCCUgugccucgucuACCUCUguuccuucugcuccAGuGcCUCCGCCUg -3' miRNA: 3'- aCCUAUGGA-----------UGGAGA--------------UC-C-GAGGUGGG- -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 155869 | 0.69 | 0.8733 |
Target: 5'- gUGGGUGUCUGCCUCc-GGC-CUugCCg -3' miRNA: 3'- -ACCUAUGGAUGGAGauCCGaGGugGG- -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 160818 | 0.69 | 0.850437 |
Target: 5'- cGGAgcCCUGCC-CUc--CUCCACCCa -3' miRNA: 3'- aCCUauGGAUGGaGAuccGAGGUGGG- -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 25499 | 0.78 | 0.40929 |
Target: 5'- aGGA-ACCgGCCUCUGGGg-CCGCCCg -3' miRNA: 3'- aCCUaUGGaUGGAGAUCCgaGGUGGG- -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 22430 | 0.78 | 0.40929 |
Target: 5'- aGGA-ACCgGCCUCUGGGg-CCGCCCg -3' miRNA: 3'- aCCUaUGGaUGGAGAUCCgaGGUGGG- -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 19361 | 0.78 | 0.40929 |
Target: 5'- aGGA-ACCgGCCUCUGGGg-CCGCCCg -3' miRNA: 3'- aCCUaUGGaUGGAGAUCCgaGGUGGG- -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 16292 | 0.78 | 0.40929 |
Target: 5'- aGGA-ACCgGCCUCUGGGg-CCGCCCg -3' miRNA: 3'- aCCUaUGGaUGGAGAUCCgaGGUGGG- -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 13223 | 0.78 | 0.40929 |
Target: 5'- aGGA-ACCgGCCUCUGGGg-CCGCCCg -3' miRNA: 3'- aCCUaUGGaUGGAGAUCCgaGGUGGG- -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 28568 | 0.78 | 0.40929 |
Target: 5'- aGGA-ACCgGCCUCUGGGg-CCGCCCg -3' miRNA: 3'- aCCUaUGGaUGGAGAUCCgaGGUGGG- -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 31637 | 0.78 | 0.40929 |
Target: 5'- aGGA-ACCgGCCUCUGGGg-CCGCCCg -3' miRNA: 3'- aCCUaUGGaUGGAGAUCCgaGGUGGG- -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 34706 | 0.78 | 0.40929 |
Target: 5'- aGGA-ACCgGCCUCUGGGg-CCGCCCg -3' miRNA: 3'- aCCUaUGGaUGGAGAUCCgaGGUGGG- -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 114900 | 0.78 | 0.40067 |
Target: 5'- cGGAUGCCUGCCUau-GGauagauagCCACCCg -3' miRNA: 3'- aCCUAUGGAUGGAgauCCga------GGUGGG- -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 91605 | 0.81 | 0.253976 |
Target: 5'- gUGGGccaaccggccccUGCCUGCCUCUuuGGCUCcCACCCc -3' miRNA: 3'- -ACCU------------AUGGAUGGAGAu-CCGAG-GUGGG- -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 40956 | 1.13 | 0.002344 |
Target: 5'- aUGGAUACCUACCUCUAGGCUCCACCCa -3' miRNA: 3'- -ACCUAUGGAUGGAGAUCCGAGGUGGG- -5' |
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33277 | 3' | -54.6 | NC_007605.1 | + | 93768 | 0.66 | 0.959665 |
Target: 5'- aGGAgagGCCUGCUguguugaaagAGGCgcaugCCAUCCu -3' miRNA: 3'- aCCUa--UGGAUGGaga-------UCCGa----GGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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