Results 81 - 100 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33279 | 3' | -53.7 | NC_007605.1 | + | 33762 | 0.72 | 0.753922 |
Target: 5'- -aAGGGGgacgGGGAGGggGGGaGGCugGg -3' miRNA: 3'- ugUCCCCa---CCCUCCuuUCUgUUGugU- -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 30693 | 0.72 | 0.753922 |
Target: 5'- -aAGGGGgacgGGGAGGggGGGaGGCugGg -3' miRNA: 3'- ugUCCCCa---CCCUCCuuUCUgUUGugU- -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 15348 | 0.72 | 0.753922 |
Target: 5'- -aAGGGGgacgGGGAGGggGGGaGGCugGg -3' miRNA: 3'- ugUCCCCa---CCCUCCuuUCUgUUGugU- -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 27624 | 0.72 | 0.753922 |
Target: 5'- -aAGGGGgacgGGGAGGggGGGaGGCugGg -3' miRNA: 3'- ugUCCCCa---CCCUCCuuUCUgUUGugU- -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 24555 | 0.72 | 0.753922 |
Target: 5'- -aAGGGGgacgGGGAGGggGGGaGGCugGg -3' miRNA: 3'- ugUCCCCa---CCCUCCuuUCUgUUGugU- -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 21486 | 0.72 | 0.753922 |
Target: 5'- -aAGGGGgacgGGGAGGggGGGaGGCugGg -3' miRNA: 3'- ugUCCCCa---CCCUCCuuUCUgUUGugU- -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 18417 | 0.72 | 0.753922 |
Target: 5'- -aAGGGGgacgGGGAGGggGGGaGGCugGg -3' miRNA: 3'- ugUCCCCa---CCCUCCuuUCUgUUGugU- -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 12279 | 0.72 | 0.753922 |
Target: 5'- -aAGGGGgacgGGGAGGggGGGaGGCugGg -3' miRNA: 3'- ugUCCCCa---CCCUCCuuUCUgUUGugU- -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 169773 | 0.73 | 0.693846 |
Target: 5'- gACAGGGGgcgGGGAcaGAGAGGCGGuCGCGc -3' miRNA: 3'- -UGUCCCCa--CCCUc-CUUUCUGUU-GUGU- -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 170311 | 0.73 | 0.693846 |
Target: 5'- gACAGGGGgcgGGGAcaGAGAGGCGGuCGCGc -3' miRNA: 3'- -UGUCCCCa--CCCUc-CUUUCUGUU-GUGU- -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 170833 | 0.73 | 0.693846 |
Target: 5'- gACAGGGGgcgGGGAcaGAGAGGCGGuCGCGc -3' miRNA: 3'- -UGUCCCCa--CCCUc-CUUUCUGUU-GUGU- -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 32143 | 0.73 | 0.693846 |
Target: 5'- gACGGGcGUGGGAGGcuGGACuuUACAg -3' miRNA: 3'- -UGUCCcCACCCUCCuuUCUGuuGUGU- -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 171371 | 0.73 | 0.693846 |
Target: 5'- gACAGGGGgcgGGGAcaGAGAGGCGGuCGCGc -3' miRNA: 3'- -UGUCCCCa--CCCUc-CUUUCUGUU-GUGU- -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 35212 | 0.73 | 0.693846 |
Target: 5'- gACGGGcGUGGGAGGcuGGACuuUACAg -3' miRNA: 3'- -UGUCCcCACCCUCCuuUCUGuuGUGU- -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 29075 | 0.73 | 0.693846 |
Target: 5'- gACGGGcGUGGGAGGcuGGACuuUACAg -3' miRNA: 3'- -UGUCCcCACCCUCCuuUCUGuuGUGU- -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 26006 | 0.73 | 0.693846 |
Target: 5'- gACGGGcGUGGGAGGcuGGACuuUACAg -3' miRNA: 3'- -UGUCCcCACCCUCCuuUCUGuuGUGU- -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 22937 | 0.73 | 0.693846 |
Target: 5'- gACGGGcGUGGGAGGcuGGACuuUACAg -3' miRNA: 3'- -UGUCCcCACCCUCCuuUCUGuuGUGU- -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 16799 | 0.73 | 0.693846 |
Target: 5'- gACGGGcGUGGGAGGcuGGACuuUACAg -3' miRNA: 3'- -UGUCCcCACCCUCCuuUCUGuuGUGU- -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 13730 | 0.73 | 0.693846 |
Target: 5'- gACGGGcGUGGGAGGcuGGACuuUACAg -3' miRNA: 3'- -UGUCCcCACCCUCCuuUCUGuuGUGU- -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 19868 | 0.73 | 0.693846 |
Target: 5'- gACGGGcGUGGGAGGcuGGACuuUACAg -3' miRNA: 3'- -UGUCCcCACCCUCCuuUCUGuuGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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