miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33279 3' -53.7 NC_007605.1 + 96174 0.68 0.915055
Target:  5'- aGCAGGaGGggcaggagGGGcAGGAGGGGCAGgaGCAg -3'
miRNA:   3'- -UGUCC-CCa-------CCC-UCCUUUCUGUUg-UGU- -5'
33279 3' -53.7 NC_007605.1 + 96128 0.67 0.931686
Target:  5'- -gAGGGGcaggagGGGcAGGAGGGGCAGgaGCAg -3'
miRNA:   3'- ugUCCCCa-----CCC-UCCUUUCUGUUg-UGU- -5'
33279 3' -53.7 NC_007605.1 + 96093 0.7 0.818845
Target:  5'- aGCAGGaGGagGGGcAGGAGGGGCAGgaGCAg -3'
miRNA:   3'- -UGUCC-CCa-CCC-UCCUUUCUGUUg-UGU- -5'
33279 3' -53.7 NC_007605.1 + 96047 0.67 0.931686
Target:  5'- -gAGGGGcaggagGGGcAGGAGGGGCAGgaGCAg -3'
miRNA:   3'- ugUCCCCa-----CCC-UCCUUUCUGUUg-UGU- -5'
33279 3' -53.7 NC_007605.1 + 96012 0.7 0.818845
Target:  5'- aGCAGGaGGagGGGcAGGAGGGGCAGgaGCAg -3'
miRNA:   3'- -UGUCC-CCa-CCC-UCCUUUCUGUUg-UGU- -5'
33279 3' -53.7 NC_007605.1 + 95958 0.68 0.926389
Target:  5'- aGCAGGaGGagGGGcAGGAGGGGCAggagGgGCAg -3'
miRNA:   3'- -UGUCC-CCa-CCC-UCCUUUCUGU----UgUGU- -5'
33279 3' -53.7 NC_007605.1 + 95907 0.68 0.909021
Target:  5'- gGCAGGaGGggcaggagGGGcAGGAGGGGCAGgaGCAg -3'
miRNA:   3'- -UGUCC-CCa-------CCC-UCCUUUCUGUUg-UGU- -5'
33279 3' -53.7 NC_007605.1 + 95862 0.66 0.968564
Target:  5'- aGCAGGaGGggcaggagcaGGAGGAGGGGCAGgaGCAg -3'
miRNA:   3'- -UGUCC-CCac--------CCUCCUUUCUGUUg-UGU- -5'
33279 3' -53.7 NC_007605.1 + 91391 0.7 0.852304
Target:  5'- -uGGGGGUGGGAGccaaAGAGGCAG-GCAg -3'
miRNA:   3'- ugUCCCCACCCUCc---UUUCUGUUgUGU- -5'
33279 3' -53.7 NC_007605.1 + 90420 0.67 0.946109
Target:  5'- aGCGGacGGUGGGGcucauGGAGGGGCGGCAg- -3'
miRNA:   3'- -UGUCc-CCACCCU-----CCUUUCUGUUGUgu -5'
33279 3' -53.7 NC_007605.1 + 86177 0.68 0.909021
Target:  5'- aGCAGGGGUGaugaaaacaGAGGcuGGauGCAGCGCAu -3'
miRNA:   3'- -UGUCCCCACc--------CUCCuuUC--UGUUGUGU- -5'
33279 3' -53.7 NC_007605.1 + 75322 0.66 0.971529
Target:  5'- gACGGGGGUGGGcaccucGGGcucAAAGGCGGa--- -3'
miRNA:   3'- -UGUCCCCACCC------UCC---UUUCUGUUgugu -5'
33279 3' -53.7 NC_007605.1 + 73279 0.73 0.683593
Target:  5'- gACGGuGGGUGGGAGGAAuuguuccuugGGAUucCACu -3'
miRNA:   3'- -UGUC-CCCACCCUCCUU----------UCUGuuGUGu -5'
33279 3' -53.7 NC_007605.1 + 69005 0.68 0.920277
Target:  5'- -aGGGGGUGcuggccaGGAGGccGAGACAgaagACACAg -3'
miRNA:   3'- ugUCCCCAC-------CCUCCu-UUCUGU----UGUGU- -5'
33279 3' -53.7 NC_007605.1 + 64803 0.73 0.662963
Target:  5'- uCGGGGGUGGuGAGGAu--GCAGCugGc -3'
miRNA:   3'- uGUCCCCACC-CUCCUuucUGUUGugU- -5'
33279 3' -53.7 NC_007605.1 + 63985 0.66 0.968564
Target:  5'- aACGGGaGGaaacagGaGGAGGAGggGGACAagaGCACAa -3'
miRNA:   3'- -UGUCC-CCa-----C-CCUCCUU--UCUGU---UGUGU- -5'
33279 3' -53.7 NC_007605.1 + 63098 0.71 0.773165
Target:  5'- cCGGGGGUGgcaguGGAGGggGGAgcuuCAGCugGu -3'
miRNA:   3'- uGUCCCCAC-----CCUCCuuUCU----GUUGugU- -5'
33279 3' -53.7 NC_007605.1 + 59673 0.67 0.936738
Target:  5'- -gAGGGaGaGGGAGGGGAGGCAGaucuCAg -3'
miRNA:   3'- ugUCCC-CaCCCUCCUUUCUGUUgu--GU- -5'
33279 3' -53.7 NC_007605.1 + 57732 0.68 0.909021
Target:  5'- gGCGcGGGGUGGGGugucGGGGAGGCGGg--- -3'
miRNA:   3'- -UGU-CCCCACCCU----CCUUUCUGUUgugu -5'
33279 3' -53.7 NC_007605.1 + 57390 0.69 0.884607
Target:  5'- gGCAGGGGcugcugcUGaGGAGGAAgaggagaaggagcccGGGCGGCugAu -3'
miRNA:   3'- -UGUCCCC-------AC-CCUCCUU---------------UCUGUUGugU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.