miRNA display CGI


Results 61 - 80 of 122 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33279 3' -53.7 NC_007605.1 + 53871 0.68 0.920845
Target:  5'- gACAGGGGcuuUGGGcGGGGAGGAa---GCAg -3'
miRNA:   3'- -UGUCCCC---ACCC-UCCUUUCUguugUGU- -5'
33279 3' -53.7 NC_007605.1 + 51224 0.7 0.852304
Target:  5'- cCGGGGG-GaGGAGGuagGAGACAGC-CAg -3'
miRNA:   3'- uGUCCCCaC-CCUCCu--UUCUGUUGuGU- -5'
33279 3' -53.7 NC_007605.1 + 48438 0.67 0.941545
Target:  5'- gGCGGGGGcguagGGGAGGAGcucGugGGgGCc -3'
miRNA:   3'- -UGUCCCCa----CCCUCCUUu--CugUUgUGu -5'
33279 3' -53.7 NC_007605.1 + 47455 0.69 0.889474
Target:  5'- gACGGuGGUGGGGGGA---GCAugGCGu -3'
miRNA:   3'- -UGUCcCCACCCUCCUuucUGUugUGU- -5'
33279 3' -53.7 NC_007605.1 + 46862 0.66 0.968564
Target:  5'- -gAGGGGuUGGGAGcugccccuGGAgAACACAu -3'
miRNA:   3'- ugUCCCC-ACCCUCcuu-----UCUgUUGUGU- -5'
33279 3' -53.7 NC_007605.1 + 43604 0.66 0.971529
Target:  5'- -uGGGGGUGGacauGAGGAGGuaauUAGCACGg -3'
miRNA:   3'- ugUCCCCACC----CUCCUUUcu--GUUGUGU- -5'
33279 3' -53.7 NC_007605.1 + 41879 1.09 0.005084
Target:  5'- gACAGGGGUGGGAGGAAAGACAACACAa -3'
miRNA:   3'- -UGUCCCCACCCUCCUUUCUGUUGUGU- -5'
33279 3' -53.7 NC_007605.1 + 41491 0.66 0.965387
Target:  5'- aGCAGGGGcuuagugugucaUGGuGAGGc-AGGCAAgGCGa -3'
miRNA:   3'- -UGUCCCC------------ACC-CUCCuuUCUGUUgUGU- -5'
33279 3' -53.7 NC_007605.1 + 41266 0.69 0.896227
Target:  5'- uGCuGGGGUGGG-GGAuGGGCucAgGCAa -3'
miRNA:   3'- -UGuCCCCACCCuCCUuUCUGu-UgUGU- -5'
33279 3' -53.7 NC_007605.1 + 41227 0.76 0.529293
Target:  5'- -gGGGGGguaggGGGGGGAGGGAUuACACu -3'
miRNA:   3'- ugUCCCCa----CCCUCCUUUCUGuUGUGu -5'
33279 3' -53.7 NC_007605.1 + 40316 0.71 0.801035
Target:  5'- gGCGGGGGUGGGGGGu------GCGCu -3'
miRNA:   3'- -UGUCCCCACCCUCCuuucuguUGUGu -5'
33279 3' -53.7 NC_007605.1 + 40160 0.71 0.791891
Target:  5'- gGCAGGGGgggGGGcagugaGGGAGGGGCGugGu- -3'
miRNA:   3'- -UGUCCCCa--CCC------UCCUUUCUGUugUgu -5'
33279 3' -53.7 NC_007605.1 + 37226 0.69 0.885309
Target:  5'- gGCAGGGGcagGGGcAGGGgcaagggcaaguccaGGGACAagcaACGCAa -3'
miRNA:   3'- -UGUCCCCa--CCC-UCCU---------------UUCUGU----UGUGU- -5'
33279 3' -53.7 NC_007605.1 + 36631 0.68 0.902745
Target:  5'- gGCGGGGGUGGuGGuGAAGGugGugGa- -3'
miRNA:   3'- -UGUCCCCACCcUC-CUUUCugUugUgu -5'
33279 3' -53.7 NC_007605.1 + 36548 0.67 0.941545
Target:  5'- -gGGGGGUGGuGGGAGuGGugGGgGCAc -3'
miRNA:   3'- ugUCCCCACCcUCCUU-UCugUUgUGU- -5'
33279 3' -53.7 NC_007605.1 + 35296 0.68 0.920845
Target:  5'- cACAGGGG-GGcGGGGAuggcccGGGugGACAgAg -3'
miRNA:   3'- -UGUCCCCaCC-CUCCU------UUCugUUGUgU- -5'
33279 3' -53.7 NC_007605.1 + 35212 0.73 0.693846
Target:  5'- gACGGGcGUGGGAGGcuGGACuuUACAg -3'
miRNA:   3'- -UGUCCcCACCCUCCuuUCUGuuGUGU- -5'
33279 3' -53.7 NC_007605.1 + 35003 0.68 0.920845
Target:  5'- cCAGGGGa--GAGGGAAGGCGACuCGc -3'
miRNA:   3'- uGUCCCCaccCUCCUUUCUGUUGuGU- -5'
33279 3' -53.7 NC_007605.1 + 34787 0.69 0.867831
Target:  5'- uCGGGccuGGagGGGAGGAGAGGgGACGCc -3'
miRNA:   3'- uGUCC---CCa-CCCUCCUUUCUgUUGUGu -5'
33279 3' -53.7 NC_007605.1 + 33762 0.72 0.753922
Target:  5'- -aAGGGGgacgGGGAGGggGGGaGGCugGg -3'
miRNA:   3'- ugUCCCCa---CCCUCCuuUCUgUUGugU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.