Results 81 - 100 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33279 | 3' | -53.7 | NC_007605.1 | + | 170311 | 0.73 | 0.693846 |
Target: 5'- gACAGGGGgcgGGGAcaGAGAGGCGGuCGCGc -3' miRNA: 3'- -UGUCCCCa--CCCUc-CUUUCUGUU-GUGU- -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 171371 | 0.73 | 0.693846 |
Target: 5'- gACAGGGGgcgGGGAcaGAGAGGCGGuCGCGc -3' miRNA: 3'- -UGUCCCCa--CCCUc-CUUUCUGUU-GUGU- -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 170778 | 0.79 | 0.36451 |
Target: 5'- -uGGGGGcGGGAGcGggGGGCGGCGCGg -3' miRNA: 3'- ugUCCCCaCCCUC-CuuUCUGUUGUGU- -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 169998 | 0.73 | 0.662963 |
Target: 5'- -gGGGGGUGGGGcauGggGGGCcGCGCAu -3' miRNA: 3'- ugUCCCCACCCUc--CuuUCUGuUGUGU- -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 165712 | 0.74 | 0.651569 |
Target: 5'- aACGGGGGUGGGcggugaucaGGGAGaacaauuccccggGGACAccuGCACGa -3' miRNA: 3'- -UGUCCCCACCC---------UCCUU-------------UCUGU---UGUGU- -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 63098 | 0.71 | 0.773165 |
Target: 5'- cCGGGGGUGgcaguGGAGGggGGAgcuuCAGCugGu -3' miRNA: 3'- uGUCCCCAC-----CCUCCuuUCU----GUUGugU- -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 40160 | 0.71 | 0.791891 |
Target: 5'- gGCAGGGGgggGGGcagugaGGGAGGGGCGugGu- -3' miRNA: 3'- -UGUCCCCa--CCC------UCCUUUCUGUugUgu -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 96303 | 0.66 | 0.968564 |
Target: 5'- aGCAGGaGG-GGcAGGAGGGGCAGgaGCAg -3' miRNA: 3'- -UGUCC-CCaCCcUCCUUUCUGUUg-UGU- -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 95862 | 0.66 | 0.968564 |
Target: 5'- aGCAGGaGGggcaggagcaGGAGGAGGGGCAGgaGCAg -3' miRNA: 3'- -UGUCC-CCac--------CCUCCUUUCUGUUg-UGU- -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 95907 | 0.68 | 0.909021 |
Target: 5'- gGCAGGaGGggcaggagGGGcAGGAGGGGCAGgaGCAg -3' miRNA: 3'- -UGUCC-CCa-------CCC-UCCUUUCUGUUg-UGU- -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 57732 | 0.68 | 0.909021 |
Target: 5'- gGCGcGGGGUGGGGugucGGGGAGGCGGg--- -3' miRNA: 3'- -UGU-CCCCACCCU----CCUUUCUGUUgugu -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 167261 | 0.68 | 0.902745 |
Target: 5'- cGCAGGGGcguUGGuGGcGGAGucuGGCAACGCc -3' miRNA: 3'- -UGUCCCC---ACC-CU-CCUUu--CUGUUGUGu -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 47455 | 0.69 | 0.889474 |
Target: 5'- gACGGuGGUGGGGGGA---GCAugGCGu -3' miRNA: 3'- -UGUCcCCACCCUCCUuucUGUugUGU- -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 37226 | 0.69 | 0.885309 |
Target: 5'- gGCAGGGGcagGGGcAGGGgcaagggcaaguccaGGGACAagcaACGCAa -3' miRNA: 3'- -UGUCCCCa--CCC-UCCU---------------UUCUGU----UGUGU- -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 57390 | 0.69 | 0.884607 |
Target: 5'- gGCAGGGGcugcugcUGaGGAGGAAgaggagaaggagcccGGGCGGCugAu -3' miRNA: 3'- -UGUCCCC-------AC-CCUCCUU---------------UCUGUUGugU- -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 158611 | 0.69 | 0.881775 |
Target: 5'- gGCGGGGGgugcGGGcugcucuGGGGucugcgcaccGAGACGGCACGc -3' miRNA: 3'- -UGUCCCCa---CCC-------UCCU----------UUCUGUUGUGU- -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 150918 | 0.69 | 0.867831 |
Target: 5'- --uGGGGUGGGAcGGGGcAGGCGugauccuggGCGCAa -3' miRNA: 3'- uguCCCCACCCU-CCUU-UCUGU---------UGUGU- -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 51224 | 0.7 | 0.852304 |
Target: 5'- cCGGGGG-GaGGAGGuagGAGACAGC-CAg -3' miRNA: 3'- uGUCCCCaC-CCUCCu--UUCUGUUGuGU- -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 91391 | 0.7 | 0.852304 |
Target: 5'- -uGGGGGUGGGAGccaaAGAGGCAG-GCAg -3' miRNA: 3'- ugUCCCCACCCUCc---UUUCUGUUgUGU- -5' |
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33279 | 3' | -53.7 | NC_007605.1 | + | 86177 | 0.68 | 0.909021 |
Target: 5'- aGCAGGGGUGaugaaaacaGAGGcuGGauGCAGCGCAu -3' miRNA: 3'- -UGUCCCCACc--------CUCCuuUC--UGUUGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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