miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33279 3' -53.7 NC_007605.1 + 22727 0.68 0.920845
Target:  5'- cCAGGGGa--GAGGGAAGGCGACuCGc -3'
miRNA:   3'- uGUCCCCaccCUCCUUUCUGUUGuGU- -5'
33279 3' -53.7 NC_007605.1 + 19952 0.68 0.920845
Target:  5'- cACAGGGG-GGcGGGGAuggcccGGGugGACAgAg -3'
miRNA:   3'- -UGUCCCCaCC-CUCCU------UUCugUUGUgU- -5'
33279 3' -53.7 NC_007605.1 + 69005 0.68 0.920277
Target:  5'- -aGGGGGUGcuggccaGGAGGccGAGACAgaagACACAg -3'
miRNA:   3'- ugUCCCCAC-------CCUCCu-UUCUGU----UGUGU- -5'
33279 3' -53.7 NC_007605.1 + 96174 0.68 0.915055
Target:  5'- aGCAGGaGGggcaggagGGGcAGGAGGGGCAGgaGCAg -3'
miRNA:   3'- -UGUCC-CCa-------CCC-UCCUUUCUGUUg-UGU- -5'
33279 3' -53.7 NC_007605.1 + 57732 0.68 0.909021
Target:  5'- gGCGcGGGGUGGGGugucGGGGAGGCGGg--- -3'
miRNA:   3'- -UGU-CCCCACCCU----CCUUUCUGUUgugu -5'
33279 3' -53.7 NC_007605.1 + 95907 0.68 0.909021
Target:  5'- gGCAGGaGGggcaggagGGGcAGGAGGGGCAGgaGCAg -3'
miRNA:   3'- -UGUCC-CCa-------CCC-UCCUUUCUGUUg-UGU- -5'
33279 3' -53.7 NC_007605.1 + 86177 0.68 0.909021
Target:  5'- aGCAGGGGUGaugaaaacaGAGGcuGGauGCAGCGCAu -3'
miRNA:   3'- -UGUCCCCACc--------CUCCuuUC--UGUUGUGU- -5'
33279 3' -53.7 NC_007605.1 + 167261 0.68 0.902745
Target:  5'- cGCAGGGGcguUGGuGGcGGAGucuGGCAACGCc -3'
miRNA:   3'- -UGUCCCC---ACC-CU-CCUUu--CUGUUGUGu -5'
33279 3' -53.7 NC_007605.1 + 36631 0.68 0.902745
Target:  5'- gGCGGGGGUGGuGGuGAAGGugGugGa- -3'
miRNA:   3'- -UGUCCCCACCcUC-CUUUCugUugUgu -5'
33279 3' -53.7 NC_007605.1 + 41266 0.69 0.896227
Target:  5'- uGCuGGGGUGGG-GGAuGGGCucAgGCAa -3'
miRNA:   3'- -UGuCCCCACCCuCCUuUCUGu-UgUGU- -5'
33279 3' -53.7 NC_007605.1 + 144082 0.69 0.896227
Target:  5'- uGCuGGGGUGGG-GGAuGGGCucAgGCAa -3'
miRNA:   3'- -UGuCCCCACCCuCCUuUCUGu-UgUGU- -5'
33279 3' -53.7 NC_007605.1 + 47455 0.69 0.889474
Target:  5'- gACGGuGGUGGGGGGA---GCAugGCGu -3'
miRNA:   3'- -UGUCcCCACCCUCCUuucUGUugUGU- -5'
33279 3' -53.7 NC_007605.1 + 37226 0.69 0.885309
Target:  5'- gGCAGGGGcagGGGcAGGGgcaagggcaaguccaGGGACAagcaACGCAa -3'
miRNA:   3'- -UGUCCCCa--CCC-UCCU---------------UUCUGU----UGUGU- -5'
33279 3' -53.7 NC_007605.1 + 57390 0.69 0.884607
Target:  5'- gGCAGGGGcugcugcUGaGGAGGAAgaggagaaggagcccGGGCGGCugAu -3'
miRNA:   3'- -UGUCCCC-------AC-CCUCCUU---------------UCUGUUGugU- -5'
33279 3' -53.7 NC_007605.1 + 158611 0.69 0.881775
Target:  5'- gGCGGGGGgugcGGGcugcucuGGGGucugcgcaccGAGACGGCACGc -3'
miRNA:   3'- -UGUCCCCa---CCC-------UCCU----------UUCUGUUGUGU- -5'
33279 3' -53.7 NC_007605.1 + 22511 0.69 0.867831
Target:  5'- uCGGGccuGGagGGGAGGAGAGGgGACGCc -3'
miRNA:   3'- uGUCC---CCa-CCCUCCUUUCUgUUGUGu -5'
33279 3' -53.7 NC_007605.1 + 150918 0.69 0.867831
Target:  5'- --uGGGGUGGGAcGGGGcAGGCGugauccuggGCGCAa -3'
miRNA:   3'- uguCCCCACCCU-CCUU-UCUGU---------UGUGU- -5'
33279 3' -53.7 NC_007605.1 + 31718 0.69 0.867831
Target:  5'- uCGGGccuGGagGGGAGGAGAGGgGACGCc -3'
miRNA:   3'- uGUCC---CCa-CCCUCCUUUCUgUUGUGu -5'
33279 3' -53.7 NC_007605.1 + 25580 0.69 0.867831
Target:  5'- uCGGGccuGGagGGGAGGAGAGGgGACGCc -3'
miRNA:   3'- uGUCC---CCa-CCCUCCUUUCUgUUGUGu -5'
33279 3' -53.7 NC_007605.1 + 19442 0.69 0.867831
Target:  5'- uCGGGccuGGagGGGAGGAGAGGgGACGCc -3'
miRNA:   3'- uGUCC---CCa-CCCUCCUUUCUgUUGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.