miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33281 3' -39 NC_007605.1 + 145891 0.69 1
Target:  5'- gUCGA---CUGCUGCGAAAGGUu -3'
miRNA:   3'- aAGUUaaaGACGGCGUUUUCUAu -5'
33281 3' -39 NC_007605.1 + 125510 0.69 1
Target:  5'- cUUCGAgcagUUCUGCCGCGu--GGUc -3'
miRNA:   3'- -AAGUUa---AAGACGGCGUuuuCUAu -5'
33281 3' -39 NC_007605.1 + 91664 0.69 1
Target:  5'- gUUCAggUUCcGCCGCGuuGGAa- -3'
miRNA:   3'- -AAGUuaAAGaCGGCGUuuUCUau -5'
33281 3' -39 NC_007605.1 + 42807 0.68 1
Target:  5'- uUUUAAaUUCUGuuGCAGcAGAUAg -3'
miRNA:   3'- -AAGUUaAAGACggCGUUuUCUAU- -5'
33281 3' -39 NC_007605.1 + 160575 0.67 1
Target:  5'- gUCA--UUCUGCCGUcucaaacggggaaGGAGGAUGg -3'
miRNA:   3'- aAGUuaAAGACGGCG-------------UUUUCUAU- -5'
33281 3' -39 NC_007605.1 + 160170 0.67 1
Target:  5'- ------cUCUGCCGUGGAAGGg- -3'
miRNA:   3'- aaguuaaAGACGGCGUUUUCUau -5'
33281 3' -39 NC_007605.1 + 11302 0.67 1
Target:  5'- cUCugugUUCUGCUGCAAAuuuuagaucAGAUGg -3'
miRNA:   3'- aAGuua-AAGACGGCGUUU---------UCUAU- -5'
33281 3' -39 NC_007605.1 + 61349 0.66 1
Target:  5'- cUCAuacUCgGCCGCGGGAGGg- -3'
miRNA:   3'- aAGUuaaAGaCGGCGUUUUCUau -5'
33281 3' -39 NC_007605.1 + 55120 0.66 1
Target:  5'- cUUCAAUUUCUGCagGUAAcuuAGGAa- -3'
miRNA:   3'- -AAGUUAAAGACGg-CGUU---UUCUau -5'
33281 3' -39 NC_007605.1 + 151888 0.66 1
Target:  5'- aUCAGga-CUGCCGCcaguAGGUAg -3'
miRNA:   3'- aAGUUaaaGACGGCGuuu-UCUAU- -5'
33281 3' -39 NC_007605.1 + 43007 0.67 1
Target:  5'- aUCAGcuaUCUGCUGCAAcAGAa- -3'
miRNA:   3'- aAGUUaa-AGACGGCGUUuUCUau -5'
33281 3' -39 NC_007605.1 + 163973 0.72 0.999999
Target:  5'- -aCGGUga-UGCCGCAAAGGAg- -3'
miRNA:   3'- aaGUUAaagACGGCGUUUUCUau -5'
33281 3' -39 NC_007605.1 + 97413 0.73 0.999995
Target:  5'- -------gCUGCCGCGGAGGGUGa -3'
miRNA:   3'- aaguuaaaGACGGCGUUUUCUAU- -5'
33281 3' -39 NC_007605.1 + 43040 1.05 0.189178
Target:  5'- uUUCAAUUUCUGCCGCAAAAGAUAa -3'
miRNA:   3'- -AAGUUAAAGACGGCGUUUUCUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.