miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33281 5' -40.5 NC_007605.1 + 42843 0.68 1
Target:  5'- uGUUAUCUuuUGCGGCAGAAa-- -3'
miRNA:   3'- -CGAUAGAcgACGUUGUCUUaaa -5'
33281 5' -40.5 NC_007605.1 + 50305 0.67 1
Target:  5'- uGCUGUCUGCUcCuGACAGGGa-- -3'
miRNA:   3'- -CGAUAGACGAcG-UUGUCUUaaa -5'
33281 5' -40.5 NC_007605.1 + 160062 0.66 1
Target:  5'- uGCUAUC-GgUGCAACGGGGc-- -3'
miRNA:   3'- -CGAUAGaCgACGUUGUCUUaaa -5'
33281 5' -40.5 NC_007605.1 + 109268 0.66 1
Target:  5'- aCUAUCUGUUGacGCAGGAUg- -3'
miRNA:   3'- cGAUAGACGACguUGUCUUAaa -5'
33281 5' -40.5 NC_007605.1 + 95400 0.66 1
Target:  5'- uGCUA-CUGggGCAACGGAAg-- -3'
miRNA:   3'- -CGAUaGACgaCGUUGUCUUaaa -5'
33281 5' -40.5 NC_007605.1 + 95107 0.66 1
Target:  5'- aGCaUGUCUGCUGgGgcucGCGGGAUg- -3'
miRNA:   3'- -CG-AUAGACGACgU----UGUCUUAaa -5'
33281 5' -40.5 NC_007605.1 + 86094 0.66 1
Target:  5'- cGCaGUCUGUUGCccCAGggUUc -3'
miRNA:   3'- -CGaUAGACGACGuuGUCuuAAa -5'
33281 5' -40.5 NC_007605.1 + 111144 0.69 0.999999
Target:  5'- -gUAUCUGCUGgGGCGGGGg-- -3'
miRNA:   3'- cgAUAGACGACgUUGUCUUaaa -5'
33281 5' -40.5 NC_007605.1 + 57593 0.7 0.999997
Target:  5'- gGCUG-CUGCUGCAGuCGGGGa-- -3'
miRNA:   3'- -CGAUaGACGACGUU-GUCUUaaa -5'
33281 5' -40.5 NC_007605.1 + 126033 0.7 0.999996
Target:  5'- aGCUGUCUccGCUGCGGucCAGAAg-- -3'
miRNA:   3'- -CGAUAGA--CGACGUU--GUCUUaaa -5'
33281 5' -40.5 NC_007605.1 + 128821 0.7 0.999996
Target:  5'- aCUAUCUGCUGCugaccaccAACGGGAc-- -3'
miRNA:   3'- cGAUAGACGACG--------UUGUCUUaaa -5'
33281 5' -40.5 NC_007605.1 + 42814 0.7 0.999993
Target:  5'- ---uUCUGUUGCAGCAGAu--- -3'
miRNA:   3'- cgauAGACGACGUUGUCUuaaa -5'
33281 5' -40.5 NC_007605.1 + 68256 0.71 0.99996
Target:  5'- cGUUGUCUGCUcgguaGCAGCGGAc--- -3'
miRNA:   3'- -CGAUAGACGA-----CGUUGUCUuaaa -5'
33281 5' -40.5 NC_007605.1 + 43004 1.03 0.135034
Target:  5'- aGCUAUCUGCUGCAACAGAAUUUa -3'
miRNA:   3'- -CGAUAGACGACGUUGUCUUAAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.