miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33283 3' -53.9 NC_007605.1 + 149677 0.77 0.42976
Target:  5'- cGCUCUgCCCGGgcagaaucUGCAGUAGAGGUaGGg -3'
miRNA:   3'- uCGAGA-GGGUC--------ACGUCAUUUCCGaCC- -5'
33283 3' -53.9 NC_007605.1 + 39937 0.66 0.967585
Target:  5'- uGCUCUgcuggCCCGGUacgccuggauuGcCGGcUGGGGGCUGGg -3'
miRNA:   3'- uCGAGA-----GGGUCA-----------C-GUC-AUUUCCGACC- -5'
33283 3' -53.9 NC_007605.1 + 167303 0.66 0.964334
Target:  5'- uGCUaC-CUguGUGguGUGuuaAGGGCUGGg -3'
miRNA:   3'- uCGA-GaGGguCACguCAU---UUCCGACC- -5'
33283 3' -53.9 NC_007605.1 + 50595 0.66 0.957162
Target:  5'- cGCuUCUCCCGGgucgaacgcUGgAGUAgcgGAGGCUGc -3'
miRNA:   3'- uCG-AGAGGGUC---------ACgUCAU---UUCCGACc -5'
33283 3' -53.9 NC_007605.1 + 63592 0.66 0.954831
Target:  5'- uGGCUCUCCggCggcgccggggguggcGGUGgAGUAugcuucgucggGGGGCUGGg -3'
miRNA:   3'- -UCGAGAGG--G---------------UCACgUCAU-----------UUCCGACC- -5'
33283 3' -53.9 NC_007605.1 + 63089 0.66 0.95323
Target:  5'- uGGCggUCgCCGGgggugGCAGUGGAGGggGGa -3'
miRNA:   3'- -UCGagAG-GGUCa----CGUCAUUUCCgaCC- -5'
33283 3' -53.9 NC_007605.1 + 40138 0.66 0.95323
Target:  5'- uGCUggUCCGGUGCAccugGAAGGCaGGg -3'
miRNA:   3'- uCGAgaGGGUCACGUca--UUUCCGaCC- -5'
33283 3' -53.9 NC_007605.1 + 157271 0.66 0.949063
Target:  5'- aAGgUCUCCCAGcaUGCGGUugaucuGGCggcgcagGGa -3'
miRNA:   3'- -UCgAGAGGGUC--ACGUCAuuu---CCGa------CC- -5'
33283 3' -53.9 NC_007605.1 + 157444 0.68 0.918953
Target:  5'- uGCUC-CCgCGGgccGCGGauGGGGCUGGg -3'
miRNA:   3'- uCGAGaGG-GUCa--CGUCauUUCCGACC- -5'
33283 3' -53.9 NC_007605.1 + 51848 0.68 0.918953
Target:  5'- gGGCUCagagugCCCGucGCAGUAGAGGaggGGa -3'
miRNA:   3'- -UCGAGa-----GGGUcaCGUCAUUUCCga-CC- -5'
33283 3' -53.9 NC_007605.1 + 163342 0.69 0.857486
Target:  5'- aGGCUCccgagUCCgGGUGacugauGGUuGAGGCUGGg -3'
miRNA:   3'- -UCGAG-----AGGgUCACg-----UCAuUUCCGACC- -5'
33283 3' -53.9 NC_007605.1 + 150607 0.71 0.77924
Target:  5'- cAGCcCUCCCGG-GCGGUGGGcGGCccGGg -3'
miRNA:   3'- -UCGaGAGGGUCaCGUCAUUU-CCGa-CC- -5'
33283 3' -53.9 NC_007605.1 + 159814 0.71 0.769747
Target:  5'- aGGCgacgCUCCCGGgcaaacaggGCAG-AGAGGCgGGa -3'
miRNA:   3'- -UCGa---GAGGGUCa--------CGUCaUUUCCGaCC- -5'
33283 3' -53.9 NC_007605.1 + 155327 0.72 0.710464
Target:  5'- gAGCUCggcguacgagUCCCGGUGC--UGGAGGCgGGg -3'
miRNA:   3'- -UCGAG----------AGGGUCACGucAUUUCCGaCC- -5'
33283 3' -53.9 NC_007605.1 + 159873 0.69 0.872754
Target:  5'- cAGCUC-CUCGGgcgacGCGGUgGAGGGCUGa -3'
miRNA:   3'- -UCGAGaGGGUCa----CGUCA-UUUCCGACc -5'
33283 3' -53.9 NC_007605.1 + 93785 0.69 0.849533
Target:  5'- cGCUCUCCCAGagGguGaggAGAGGcCUGc -3'
miRNA:   3'- uCGAGAGGGUCa-CguCa--UUUCC-GACc -5'
33283 3' -53.9 NC_007605.1 + 46882 0.74 0.638308
Target:  5'- uGGCgcagCUUCaCGGUGCAG-AGGGGUUGGg -3'
miRNA:   3'- -UCGa---GAGG-GUCACGUCaUUUCCGACC- -5'
33283 3' -53.9 NC_007605.1 + 133561 0.75 0.555648
Target:  5'- gGGCgUUCCCGGUGagccgAGUGAAcGGCUGGg -3'
miRNA:   3'- -UCGaGAGGGUCACg----UCAUUU-CCGACC- -5'
33283 3' -53.9 NC_007605.1 + 68829 0.78 0.403114
Target:  5'- aGGC-CUCuCCAGUGCGGUGuugcuggaguGGCUGGg -3'
miRNA:   3'- -UCGaGAG-GGUCACGUCAUuu--------CCGACC- -5'
33283 3' -53.9 NC_007605.1 + 135777 0.66 0.967585
Target:  5'- uGGCUCUUgaCGGUGaggggauccaGGUGAAGGCaGGc -3'
miRNA:   3'- -UCGAGAGg-GUCACg---------UCAUUUCCGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.