miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33284 3' -57.6 NC_007605.1 + 105213 0.66 0.849202
Target:  5'- uCAGCGGCCGcGUguaGGAgaaCCCGgGUgacgGCGg -3'
miRNA:   3'- -GUCGCUGGC-CG---UCUa--GGGCgUAa---CGC- -5'
33284 3' -57.6 NC_007605.1 + 156439 0.67 0.833223
Target:  5'- gGGCGGCCGGacccuCAGuggCCagcagaGCAUUGCa -3'
miRNA:   3'- gUCGCUGGCC-----GUCua-GGg-----CGUAACGc -5'
33284 3' -57.6 NC_007605.1 + 157431 0.67 0.799205
Target:  5'- aCGGCGGCgGgGguGcUCCCGCGggccGCGg -3'
miRNA:   3'- -GUCGCUGgC-CguCuAGGGCGUaa--CGC- -5'
33284 3' -57.6 NC_007605.1 + 61147 0.67 0.798322
Target:  5'- uCAGgGACCGGCAGuAUgccucgacgucugUCCGCGggGCc -3'
miRNA:   3'- -GUCgCUGGCCGUC-UA-------------GGGCGUaaCGc -5'
33284 3' -57.6 NC_007605.1 + 135063 0.68 0.781288
Target:  5'- gGGUGACCuGGCucAGGUCCgGCGcccUGCGc -3'
miRNA:   3'- gUCGCUGG-CCG--UCUAGGgCGUa--ACGC- -5'
33284 3' -57.6 NC_007605.1 + 62437 0.68 0.762854
Target:  5'- -cGCGGCCGcCAGggCCCGgGUcucUGCGa -3'
miRNA:   3'- guCGCUGGCcGUCuaGGGCgUA---ACGC- -5'
33284 3' -57.6 NC_007605.1 + 62218 0.68 0.753465
Target:  5'- cCGGCGGCgGGCgguagAGAUCCUggGCGUguacGCGg -3'
miRNA:   3'- -GUCGCUGgCCG-----UCUAGGG--CGUAa---CGC- -5'
33284 3' -57.6 NC_007605.1 + 21953 0.69 0.695263
Target:  5'- gAGCGACCGGC----CCCGCGccugGCGc -3'
miRNA:   3'- gUCGCUGGCCGucuaGGGCGUaa--CGC- -5'
33284 3' -57.6 NC_007605.1 + 115999 0.7 0.644269
Target:  5'- uCAGUGACCGGaCGGGUCucacgagggucugCCGCGUguuUGCu -3'
miRNA:   3'- -GUCGCUGGCC-GUCUAG-------------GGCGUA---ACGc -5'
33284 3' -57.6 NC_007605.1 + 48963 0.71 0.625152
Target:  5'- -uGCGGCCGGU-GGUCCUGCGggggGUGa -3'
miRNA:   3'- guCGCUGGCCGuCUAGGGCGUaa--CGC- -5'
33284 3' -57.6 NC_007605.1 + 95143 0.71 0.625152
Target:  5'- cCAGCGGCCucCAGGUCCaagcaGCAcUGCGg -3'
miRNA:   3'- -GUCGCUGGccGUCUAGGg----CGUaACGC- -5'
33284 3' -57.6 NC_007605.1 + 160613 0.71 0.615095
Target:  5'- cCAGCucGGCCaGCAGG-CCgGCGUUGCGc -3'
miRNA:   3'- -GUCG--CUGGcCGUCUaGGgCGUAACGC- -5'
33284 3' -57.6 NC_007605.1 + 106476 0.71 0.595025
Target:  5'- gCGGCGGCUGGCAGG-CCUGCAc---- -3'
miRNA:   3'- -GUCGCUGGCCGUCUaGGGCGUaacgc -5'
33284 3' -57.6 NC_007605.1 + 44736 1.08 0.002736
Target:  5'- aCAGCGACCGGCAGAUCCCGCAUUGCGc -3'
miRNA:   3'- -GUCGCUGGCCGUCUAGGGCGUAACGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.