Results 1 - 14 of 14 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33284 | 3' | -57.6 | NC_007605.1 | + | 106476 | 0.71 | 0.595025 |
Target: 5'- gCGGCGGCUGGCAGG-CCUGCAc---- -3' miRNA: 3'- -GUCGCUGGCCGUCUaGGGCGUaacgc -5' |
|||||||
33284 | 3' | -57.6 | NC_007605.1 | + | 105213 | 0.66 | 0.849202 |
Target: 5'- uCAGCGGCCGcGUguaGGAgaaCCCGgGUgacgGCGg -3' miRNA: 3'- -GUCGCUGGC-CG---UCUa--GGGCgUAa---CGC- -5' |
|||||||
33284 | 3' | -57.6 | NC_007605.1 | + | 157431 | 0.67 | 0.799205 |
Target: 5'- aCGGCGGCgGgGguGcUCCCGCGggccGCGg -3' miRNA: 3'- -GUCGCUGgC-CguCuAGGGCGUaa--CGC- -5' |
|||||||
33284 | 3' | -57.6 | NC_007605.1 | + | 61147 | 0.67 | 0.798322 |
Target: 5'- uCAGgGACCGGCAGuAUgccucgacgucugUCCGCGggGCc -3' miRNA: 3'- -GUCgCUGGCCGUC-UA-------------GGGCGUaaCGc -5' |
|||||||
33284 | 3' | -57.6 | NC_007605.1 | + | 135063 | 0.68 | 0.781288 |
Target: 5'- gGGUGACCuGGCucAGGUCCgGCGcccUGCGc -3' miRNA: 3'- gUCGCUGG-CCG--UCUAGGgCGUa--ACGC- -5' |
|||||||
33284 | 3' | -57.6 | NC_007605.1 | + | 62437 | 0.68 | 0.762854 |
Target: 5'- -cGCGGCCGcCAGggCCCGgGUcucUGCGa -3' miRNA: 3'- guCGCUGGCcGUCuaGGGCgUA---ACGC- -5' |
|||||||
33284 | 3' | -57.6 | NC_007605.1 | + | 21953 | 0.69 | 0.695263 |
Target: 5'- gAGCGACCGGC----CCCGCGccugGCGc -3' miRNA: 3'- gUCGCUGGCCGucuaGGGCGUaa--CGC- -5' |
|||||||
33284 | 3' | -57.6 | NC_007605.1 | + | 48963 | 0.71 | 0.625152 |
Target: 5'- -uGCGGCCGGU-GGUCCUGCGggggGUGa -3' miRNA: 3'- guCGCUGGCCGuCUAGGGCGUaa--CGC- -5' |
|||||||
33284 | 3' | -57.6 | NC_007605.1 | + | 95143 | 0.71 | 0.625152 |
Target: 5'- cCAGCGGCCucCAGGUCCaagcaGCAcUGCGg -3' miRNA: 3'- -GUCGCUGGccGUCUAGGg----CGUaACGC- -5' |
|||||||
33284 | 3' | -57.6 | NC_007605.1 | + | 160613 | 0.71 | 0.615095 |
Target: 5'- cCAGCucGGCCaGCAGG-CCgGCGUUGCGc -3' miRNA: 3'- -GUCG--CUGGcCGUCUaGGgCGUAACGC- -5' |
|||||||
33284 | 3' | -57.6 | NC_007605.1 | + | 44736 | 1.08 | 0.002736 |
Target: 5'- aCAGCGACCGGCAGAUCCCGCAUUGCGc -3' miRNA: 3'- -GUCGCUGGCCGUCUAGGGCGUAACGC- -5' |
|||||||
33284 | 3' | -57.6 | NC_007605.1 | + | 115999 | 0.7 | 0.644269 |
Target: 5'- uCAGUGACCGGaCGGGUCucacgagggucugCCGCGUguuUGCu -3' miRNA: 3'- -GUCGCUGGCC-GUCUAG-------------GGCGUA---ACGc -5' |
|||||||
33284 | 3' | -57.6 | NC_007605.1 | + | 62218 | 0.68 | 0.753465 |
Target: 5'- cCGGCGGCgGGCgguagAGAUCCUggGCGUguacGCGg -3' miRNA: 3'- -GUCGCUGgCCG-----UCUAGGG--CGUAa---CGC- -5' |
|||||||
33284 | 3' | -57.6 | NC_007605.1 | + | 156439 | 0.67 | 0.833223 |
Target: 5'- gGGCGGCCGGacccuCAGuggCCagcagaGCAUUGCa -3' miRNA: 3'- gUCGCUGGCC-----GUCua-GGg-----CGUAACGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home