miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33284 5' -54.2 NC_007605.1 + 215 0.66 0.956244
Target:  5'- gCCGCugCACaaaGGAAACUGCugacacCGGUg- -3'
miRNA:   3'- aGGCGugGUG---UCUUUGAUGu-----GCCGga -5'
33284 5' -54.2 NC_007605.1 + 132763 0.66 0.956244
Target:  5'- cUCGCAaggCACAGAGGCUAgAgGGCa- -3'
miRNA:   3'- aGGCGUg--GUGUCUUUGAUgUgCCGga -5'
33284 5' -54.2 NC_007605.1 + 136868 0.66 0.952289
Target:  5'- cCUGCGCCgGgAGAcGCUGuccUACGGCCa -3'
miRNA:   3'- aGGCGUGG-UgUCUuUGAU---GUGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 58061 0.66 0.952289
Target:  5'- gCCGCggaggccgggGCCGCGGAGGC--CGgGGCCg -3'
miRNA:   3'- aGGCG----------UGGUGUCUUUGauGUgCCGGa -5'
33284 5' -54.2 NC_007605.1 + 102070 0.66 0.952289
Target:  5'- cCUGCAUC-CAGAAGCg--AUGGCCg -3'
miRNA:   3'- aGGCGUGGuGUCUUUGaugUGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 59844 0.66 0.952289
Target:  5'- uUCCGCAuccuccCCGCcaaaAAACU-CGCGGCCa -3'
miRNA:   3'- -AGGCGU------GGUGuc--UUUGAuGUGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 138885 0.66 0.948101
Target:  5'- aCCGgaCACCGCGGAgggccaAACUcCGCGGuCCUu -3'
miRNA:   3'- aGGC--GUGGUGUCU------UUGAuGUGCC-GGA- -5'
33284 5' -54.2 NC_007605.1 + 165186 0.66 0.948101
Target:  5'- cCUGUGCCGCAuGAAACUGgGCGaGaCCg -3'
miRNA:   3'- aGGCGUGGUGU-CUUUGAUgUGC-C-GGa -5'
33284 5' -54.2 NC_007605.1 + 62402 0.66 0.948101
Target:  5'- aCCGCuaccCCugGGcgGCUGCAgGGCa- -3'
miRNA:   3'- aGGCGu---GGugUCuuUGAUGUgCCGga -5'
33284 5' -54.2 NC_007605.1 + 80693 0.66 0.948101
Target:  5'- aUCCcCGCUACAGuauuuucuuuGACUAUAUGGCUa -3'
miRNA:   3'- -AGGcGUGGUGUCu---------UUGAUGUGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 53756 0.66 0.947235
Target:  5'- cCCGCACggccuCGCAGAugccccggauccACUugGCGGCUg -3'
miRNA:   3'- aGGCGUG-----GUGUCUu-----------UGAugUGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 58807 0.66 0.946798
Target:  5'- aCCGCcccucaggACCACGG-AGCUgggcacguccgucaACugGGCCa -3'
miRNA:   3'- aGGCG--------UGGUGUCuUUGA--------------UGugCCGGa -5'
33284 5' -54.2 NC_007605.1 + 159396 0.67 0.943676
Target:  5'- gUUGCGCCagGCAG-GACUGCAgcuUGGCCa -3'
miRNA:   3'- aGGCGUGG--UGUCuUUGAUGU---GCCGGa -5'
33284 5' -54.2 NC_007605.1 + 169390 0.67 0.943221
Target:  5'- cCCGCGCCucuuuguGCAGA--UUACACuGCCg -3'
miRNA:   3'- aGGCGUGG-------UGUCUuuGAUGUGcCGGa -5'
33284 5' -54.2 NC_007605.1 + 52123 0.67 0.943221
Target:  5'- cUCCGC-CCugGGGAGCUcuucuccGCGuguauaGGCCUg -3'
miRNA:   3'- -AGGCGuGGugUCUUUGA-------UGUg-----CCGGA- -5'
33284 5' -54.2 NC_007605.1 + 14141 0.67 0.939013
Target:  5'- -aCGCAcCCGCuuuGggGCUGCcucuccCGGCCUu -3'
miRNA:   3'- agGCGU-GGUGu--CuuUGAUGu-----GCCGGA- -5'
33284 5' -54.2 NC_007605.1 + 50332 0.67 0.939013
Target:  5'- -aCGCGCgGCGGAGAUgcagccgacgGCGgGGCCg -3'
miRNA:   3'- agGCGUGgUGUCUUUGa---------UGUgCCGGa -5'
33284 5' -54.2 NC_007605.1 + 116576 0.67 0.939013
Target:  5'- -gUGCGCCcuuACAGGcAACUACAUggGGCCg -3'
miRNA:   3'- agGCGUGG---UGUCU-UUGAUGUG--CCGGa -5'
33284 5' -54.2 NC_007605.1 + 66471 0.67 0.939013
Target:  5'- gCgGCACCgACAG-AGCcGCGCuGGCCUu -3'
miRNA:   3'- aGgCGUGG-UGUCuUUGaUGUG-CCGGA- -5'
33284 5' -54.2 NC_007605.1 + 72045 0.67 0.939013
Target:  5'- cCCGCAgguaAGAAGCUACACcGCCa -3'
miRNA:   3'- aGGCGUggugUCUUUGAUGUGcCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.