miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33285 5' -56.2 NC_007605.1 + 158156 0.67 0.837073
Target:  5'- uGGCUggcGUAGcgGcGCACCCCGUuggccAGGCc -3'
miRNA:   3'- -CCGA---CGUCuaCaCGUGGGGCGu----UCUG- -5'
33285 5' -56.2 NC_007605.1 + 39549 0.68 0.820236
Target:  5'- cGGCggcGCAGcgGUGCccagcggggccACCCCccacccggaGCGGGGCa -3'
miRNA:   3'- -CCGa--CGUCuaCACG-----------UGGGG---------CGUUCUG- -5'
33285 5' -56.2 NC_007605.1 + 39674 0.68 0.820236
Target:  5'- cGGCggcGCAGcgGUGCccagcggggccACCCCccacccggaGCGGGGCa -3'
miRNA:   3'- -CCGa--CGUCuaCACG-----------UGGGG---------CGUUCUG- -5'
33285 5' -56.2 NC_007605.1 + 39299 0.68 0.820236
Target:  5'- cGGCggcGCAGcgGUGCccagcggggccACCCCccacccggaGCGGGGCa -3'
miRNA:   3'- -CCGa--CGUCuaCACG-----------UGGGG---------CGUUCUG- -5'
33285 5' -56.2 NC_007605.1 + 39174 0.68 0.820236
Target:  5'- cGGCggcGCAGcgGUGCccagcggggccACCCCccacccggaGCGGGGCa -3'
miRNA:   3'- -CCGa--CGUCuaCACG-----------UGGGG---------CGUUCUG- -5'
33285 5' -56.2 NC_007605.1 + 39924 0.68 0.820236
Target:  5'- cGGCggcGCAGcgGUGCccagcggggccACCCCccacccggaGCGGGGCa -3'
miRNA:   3'- -CCGa--CGUCuaCACG-----------UGGGG---------CGUUCUG- -5'
33285 5' -56.2 NC_007605.1 + 38675 0.68 0.820236
Target:  5'- cGGCggcGCAGcgGUGCccagcggggccACCCCccacccggaGCGGGGCa -3'
miRNA:   3'- -CCGa--CGUCuaCACG-----------UGGGG---------CGUUCUG- -5'
33285 5' -56.2 NC_007605.1 + 39424 0.68 0.820236
Target:  5'- cGGCggcGCAGcgGUGCccagcggggccACCCCccacccggaGCGGGGCa -3'
miRNA:   3'- -CCGa--CGUCuaCACG-----------UGGGG---------CGUUCUG- -5'
33285 5' -56.2 NC_007605.1 + 38925 0.68 0.820236
Target:  5'- cGGCggcGCAGcgGUGCccagcggggccACCCCccacccggaGCGGGGCa -3'
miRNA:   3'- -CCGa--CGUCuaCACG-----------UGGGG---------CGUUCUG- -5'
33285 5' -56.2 NC_007605.1 + 39050 0.68 0.820236
Target:  5'- cGGCggcGCAGcgGUGCccagcggggccACCCCccacccggaGCGGGGCa -3'
miRNA:   3'- -CCGa--CGUCuaCACG-----------UGGGG---------CGUUCUG- -5'
33285 5' -56.2 NC_007605.1 + 39799 0.68 0.820236
Target:  5'- cGGCggcGCAGcgGUGCccagcggggccACCCCccacccggaGCGGGGCa -3'
miRNA:   3'- -CCGa--CGUCuaCACG-----------UGGGG---------CGUUCUG- -5'
33285 5' -56.2 NC_007605.1 + 38550 0.68 0.820236
Target:  5'- cGGCggcGCAGcgGUGCccagcggggccACCCCccacccggaGCGGGGCa -3'
miRNA:   3'- -CCGa--CGUCuaCACG-----------UGGGG---------CGUUCUG- -5'
33285 5' -56.2 NC_007605.1 + 38800 0.68 0.820236
Target:  5'- cGGCggcGCAGcgGUGCccagcggggccACCCCccacccggaGCGGGGCa -3'
miRNA:   3'- -CCGa--CGUCuaCACG-----------UGGGG---------CGUUCUG- -5'
33285 5' -56.2 NC_007605.1 + 109391 0.68 0.811556
Target:  5'- cGGUUgGCGGAUGcGU-CCCCGCAgaugagcuuacAGACa -3'
miRNA:   3'- -CCGA-CGUCUACaCGuGGGGCGU-----------UCUG- -5'
33285 5' -56.2 NC_007605.1 + 134724 0.68 0.793715
Target:  5'- aGGCUagacGCAGcuGUGUGCGCgCCGCcagcauGGCa -3'
miRNA:   3'- -CCGA----CGUC--UACACGUGgGGCGuu----CUG- -5'
33285 5' -56.2 NC_007605.1 + 156420 0.68 0.793715
Target:  5'- cGGCUGCugcgacaucuGGcgcGUGCGCCUCGUGAGGg -3'
miRNA:   3'- -CCGACG----------UCua-CACGUGGGGCGUUCUg -5'
33285 5' -56.2 NC_007605.1 + 150607 0.68 0.792807
Target:  5'- cGGCgUGCgaccaauGGGUGcUGCGCCCgCGCGuguGGACc -3'
miRNA:   3'- -CCG-ACG-------UCUAC-ACGUGGG-GCGU---UCUG- -5'
33285 5' -56.2 NC_007605.1 + 154942 0.69 0.775289
Target:  5'- uGCUGUAGAUGUGCcugGCUCUGUccagaauguAGGGCc -3'
miRNA:   3'- cCGACGUCUACACG---UGGGGCG---------UUCUG- -5'
33285 5' -56.2 NC_007605.1 + 64344 0.69 0.765879
Target:  5'- aGGCgGUGGAgcagGCGCCCgGcCAGGACa -3'
miRNA:   3'- -CCGaCGUCUaca-CGUGGGgC-GUUCUG- -5'
33285 5' -56.2 NC_007605.1 + 160866 0.69 0.73697
Target:  5'- aGCUGagcGUGUGCACCCgGC-GGACc -3'
miRNA:   3'- cCGACgucUACACGUGGGgCGuUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.