miRNA display CGI


Results 21 - 40 of 172 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33286 3' -63.1 NC_007605.1 + 141136 0.66 0.609992
Target:  5'- --cCGguGGGCCaCCcgGCCgccccccgagcUCCagGGCCg -3'
miRNA:   3'- uaaGCguCCCGG-GGa-CGG-----------AGGa-CCGG- -5'
33286 3' -63.1 NC_007605.1 + 141748 0.66 0.609992
Target:  5'- --cCGguGGGCCaCCcgGCCgccccccgagcUCCagGGCCg -3'
miRNA:   3'- uaaGCguCCCGG-GGa-CGG-----------AGGa-CCGG- -5'
33286 3' -63.1 NC_007605.1 + 141646 0.66 0.609992
Target:  5'- --cCGguGGGCCaCCcgGCCgccccccgagcUCCagGGCCg -3'
miRNA:   3'- uaaGCguCCCGG-GGa-CGG-----------AGGa-CCGG- -5'
33286 3' -63.1 NC_007605.1 + 73308 0.66 0.609992
Target:  5'- gAUUC-CAcuGGCCCCgGCagguggCCUGGCCg -3'
miRNA:   3'- -UAAGcGUc-CCGGGGaCGga----GGACCGG- -5'
33286 3' -63.1 NC_007605.1 + 120492 0.66 0.609992
Target:  5'- --gUGcCAGGGCCCCUugg-CUUGGCCc -3'
miRNA:   3'- uaaGC-GUCCCGGGGAcggaGGACCGG- -5'
33286 3' -63.1 NC_007605.1 + 142461 0.66 0.609992
Target:  5'- --cCGguGGGCCaCCcgGCCgccccccgagcUCCagGGCCg -3'
miRNA:   3'- uaaGCguCCCGG-GGa-CGG-----------AGGa-CCGG- -5'
33286 3' -63.1 NC_007605.1 + 141442 0.66 0.609992
Target:  5'- --cCGguGGGCCaCCcgGCCgccccccgagcUCCagGGCCg -3'
miRNA:   3'- uaaGCguCCCGG-GGa-CGG-----------AGGa-CCGG- -5'
33286 3' -63.1 NC_007605.1 + 141544 0.66 0.609992
Target:  5'- --cCGguGGGCCaCCcgGCCgccccccgagcUCCagGGCCg -3'
miRNA:   3'- uaaGCguCCCGG-GGa-CGG-----------AGGa-CCGG- -5'
33286 3' -63.1 NC_007605.1 + 23970 0.66 0.609011
Target:  5'- --cCGgGGGGCCCggGCCggguuggUCCagGGCCu -3'
miRNA:   3'- uaaGCgUCCCGGGgaCGG-------AGGa-CCGG- -5'
33286 3' -63.1 NC_007605.1 + 14763 0.66 0.609011
Target:  5'- --cCGgGGGGCCCggGCCggguuggUCCagGGCCu -3'
miRNA:   3'- uaaGCgUCCCGGGgaCGG-------AGGa-CCGG- -5'
33286 3' -63.1 NC_007605.1 + 33176 0.66 0.609011
Target:  5'- --cCGgGGGGCCCggGCCggguuggUCCagGGCCu -3'
miRNA:   3'- uaaGCgUCCCGGGgaCGG-------AGGa-CCGG- -5'
33286 3' -63.1 NC_007605.1 + 20901 0.66 0.609011
Target:  5'- --cCGgGGGGCCCggGCCggguuggUCCagGGCCu -3'
miRNA:   3'- uaaGCgUCCCGGGgaCGG-------AGGa-CCGG- -5'
33286 3' -63.1 NC_007605.1 + 27039 0.66 0.609011
Target:  5'- --cCGgGGGGCCCggGCCggguuggUCCagGGCCu -3'
miRNA:   3'- uaaGCgUCCCGGGgaCGG-------AGGa-CCGG- -5'
33286 3' -63.1 NC_007605.1 + 17832 0.66 0.609011
Target:  5'- --cCGgGGGGCCCggGCCggguuggUCCagGGCCu -3'
miRNA:   3'- uaaGCgUCCCGGGgaCGG-------AGGa-CCGG- -5'
33286 3' -63.1 NC_007605.1 + 51681 0.66 0.60019
Target:  5'- --gUGgGGGGCCUg-GCCUCCUuagguuuggcGGCCc -3'
miRNA:   3'- uaaGCgUCCCGGGgaCGGAGGA----------CCGG- -5'
33286 3' -63.1 NC_007605.1 + 129106 0.66 0.590411
Target:  5'- --cCGCcuGGUCCagcguUGCCUCCUggggGGCCa -3'
miRNA:   3'- uaaGCGucCCGGGg----ACGGAGGA----CCGG- -5'
33286 3' -63.1 NC_007605.1 + 4130 0.66 0.590411
Target:  5'- --cCGUGGuGGCCUCUGUCUCC--GCCc -3'
miRNA:   3'- uaaGCGUC-CCGGGGACGGAGGacCGG- -5'
33286 3' -63.1 NC_007605.1 + 64461 0.66 0.590411
Target:  5'- -gUCuCAGGGCagCCCUGCagcgggCCaGGCCg -3'
miRNA:   3'- uaAGcGUCCCG--GGGACGga----GGaCCGG- -5'
33286 3' -63.1 NC_007605.1 + 30108 0.66 0.589434
Target:  5'- --aCGgGGGGCCCggGCCggguuggUCCagGGCCu -3'
miRNA:   3'- uaaGCgUCCCGGGgaCGG-------AGGa-CCGG- -5'
33286 3' -63.1 NC_007605.1 + 161000 0.66 0.581632
Target:  5'- ---gGCAGGGCUCCggggGCagacgcaagcgccgUCUGGCCa -3'
miRNA:   3'- uaagCGUCCCGGGGa---CGga------------GGACCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.