miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33286 5' -50.4 NC_007605.1 + 136232 0.66 0.99444
Target:  5'- cGGAC-AAGGCACuucAGAGcccaccaccgGCCUcCACa -3'
miRNA:   3'- aCCUGaUUCCGUGu--UCUUa---------CGGA-GUG- -5'
33286 5' -50.4 NC_007605.1 + 143468 0.66 0.994182
Target:  5'- gGGGCUaGAGGCccGCGAGAuuugggguaggcggaGCCUCAg -3'
miRNA:   3'- aCCUGA-UUCCG--UGUUCUua-------------CGGAGUg -5'
33286 5' -50.4 NC_007605.1 + 66867 0.66 0.993544
Target:  5'- gGGAC-AGGGCgGCGAuGAAcGCCUaCGCa -3'
miRNA:   3'- aCCUGaUUCCG-UGUU-CUUaCGGA-GUG- -5'
33286 5' -50.4 NC_007605.1 + 108095 0.66 0.993544
Target:  5'- gUGGGCUAGGuGCcgACAccGGggUGCCa--- -3'
miRNA:   3'- -ACCUGAUUC-CG--UGU--UCuuACGGagug -5'
33286 5' -50.4 NC_007605.1 + 168552 0.66 0.992537
Target:  5'- gGGugUGGGGCA-AAGggUGUaauaCUUACu -3'
miRNA:   3'- aCCugAUUCCGUgUUCuuACG----GAGUG- -5'
33286 5' -50.4 NC_007605.1 + 80715 0.66 0.992537
Target:  5'- -uGACUAuauGGCuauacACAGGA--GCCUCACg -3'
miRNA:   3'- acCUGAUu--CCG-----UGUUCUuaCGGAGUG- -5'
33286 5' -50.4 NC_007605.1 + 85697 0.66 0.992537
Target:  5'- cGaGAUgcc-GCACGGGGggGCCUCGCa -3'
miRNA:   3'- aC-CUGauucCGUGUUCUuaCGGAGUG- -5'
33286 5' -50.4 NC_007605.1 + 56338 0.67 0.990149
Target:  5'- cGGACaucAGGgACAAGGugGCCUCGg -3'
miRNA:   3'- aCCUGau-UCCgUGUUCUuaCGGAGUg -5'
33286 5' -50.4 NC_007605.1 + 155626 0.67 0.990149
Target:  5'- cGGAUcuuUGAGGCcaACGuGGAUGCCaCGCg -3'
miRNA:   3'- aCCUG---AUUCCG--UGUuCUUACGGaGUG- -5'
33286 5' -50.4 NC_007605.1 + 19389 0.67 0.990015
Target:  5'- cUGGGCUcugaagcccggggAAGGgGCGAGGAaccgGCCUCu- -3'
miRNA:   3'- -ACCUGA-------------UUCCgUGUUCUUa---CGGAGug -5'
33286 5' -50.4 NC_007605.1 + 34734 0.67 0.990015
Target:  5'- cUGGGCUcugaagcccggggAAGGgGCGAGGAaccgGCCUCu- -3'
miRNA:   3'- -ACCUGA-------------UUCCgUGUUCUUa---CGGAGug -5'
33286 5' -50.4 NC_007605.1 + 31665 0.67 0.990015
Target:  5'- cUGGGCUcugaagcccggggAAGGgGCGAGGAaccgGCCUCu- -3'
miRNA:   3'- -ACCUGA-------------UUCCgUGUUCUUa---CGGAGug -5'
33286 5' -50.4 NC_007605.1 + 28596 0.67 0.990015
Target:  5'- cUGGGCUcugaagcccggggAAGGgGCGAGGAaccgGCCUCu- -3'
miRNA:   3'- -ACCUGA-------------UUCCgUGUUCUUa---CGGAGug -5'
33286 5' -50.4 NC_007605.1 + 13251 0.67 0.990015
Target:  5'- cUGGGCUcugaagcccggggAAGGgGCGAGGAaccgGCCUCu- -3'
miRNA:   3'- -ACCUGA-------------UUCCgUGUUCUUa---CGGAGug -5'
33286 5' -50.4 NC_007605.1 + 16320 0.67 0.990015
Target:  5'- cUGGGCUcugaagcccggggAAGGgGCGAGGAaccgGCCUCu- -3'
miRNA:   3'- -ACCUGA-------------UUCCgUGUUCUUa---CGGAGug -5'
33286 5' -50.4 NC_007605.1 + 22458 0.67 0.990015
Target:  5'- cUGGGCUcugaagcccggggAAGGgGCGAGGAaccgGCCUCu- -3'
miRNA:   3'- -ACCUGA-------------UUCCgUGUUCUUa---CGGAGug -5'
33286 5' -50.4 NC_007605.1 + 25527 0.67 0.990015
Target:  5'- cUGGGCUcugaagcccggggAAGGgGCGAGGAaccgGCCUCu- -3'
miRNA:   3'- -ACCUGA-------------UUCCgUGUUCUUa---CGGAGug -5'
33286 5' -50.4 NC_007605.1 + 51838 0.67 0.988749
Target:  5'- gGGACcggaAGGGCuC-AGAGUGCCcgUCGCa -3'
miRNA:   3'- aCCUGa---UUCCGuGuUCUUACGG--AGUG- -5'
33286 5' -50.4 NC_007605.1 + 5320 0.67 0.9883
Target:  5'- gGGGCUGcguccugccuuguuGGGUGCAAGGcucGUGCCUgGg -3'
miRNA:   3'- aCCUGAU--------------UCCGUGUUCU---UACGGAgUg -5'
33286 5' -50.4 NC_007605.1 + 100946 0.67 0.987199
Target:  5'- -aGACUGccGGGCAgGGGcGUGCCgCGCg -3'
miRNA:   3'- acCUGAU--UCCGUgUUCuUACGGaGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.