Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33287 | 3' | -48.5 | NC_007605.1 | + | 46181 | 1.12 | 0.011167 |
Target: 5'- gCCUUUUGAUGGCCCACUCCUAUCUUCc -3' miRNA: 3'- -GGAAAACUACCGGGUGAGGAUAGAAG- -5' |
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33287 | 3' | -48.5 | NC_007605.1 | + | 65452 | 0.85 | 0.393461 |
Target: 5'- aCCUUUgUGGUGGCCUGCUCCauUCUUCa -3' miRNA: 3'- -GGAAA-ACUACCGGGUGAGGauAGAAG- -5' |
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33287 | 3' | -48.5 | NC_007605.1 | + | 59416 | 0.7 | 0.986951 |
Target: 5'- -----cGAUGGCCUuucCCUGUCUUCc -3' miRNA: 3'- ggaaaaCUACCGGGugaGGAUAGAAG- -5' |
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33287 | 3' | -48.5 | NC_007605.1 | + | 162139 | 0.69 | 0.992377 |
Target: 5'- cCCUUgucGAUGGCCagGCUCCUAa---- -3' miRNA: 3'- -GGAAaa-CUACCGGg-UGAGGAUagaag -5' |
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33287 | 3' | -48.5 | NC_007605.1 | + | 14403 | 0.68 | 0.997433 |
Target: 5'- cCCUgaccUUUGGUGaagucacaaacaaGCCCACUCCccUGUCUg- -3' miRNA: 3'- -GGA----AAACUAC-------------CGGGUGAGG--AUAGAag -5' |
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33287 | 3' | -48.5 | NC_007605.1 | + | 17472 | 0.68 | 0.997433 |
Target: 5'- cCCUgaccUUUGGUGaagucacaaacaaGCCCACUCCccUGUCUg- -3' miRNA: 3'- -GGA----AAACUAC-------------CGGGUGAGG--AUAGAag -5' |
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33287 | 3' | -48.5 | NC_007605.1 | + | 20541 | 0.68 | 0.997433 |
Target: 5'- cCCUgaccUUUGGUGaagucacaaacaaGCCCACUCCccUGUCUg- -3' miRNA: 3'- -GGA----AAACUAC-------------CGGGUGAGG--AUAGAag -5' |
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33287 | 3' | -48.5 | NC_007605.1 | + | 23610 | 0.68 | 0.997433 |
Target: 5'- cCCUgaccUUUGGUGaagucacaaacaaGCCCACUCCccUGUCUg- -3' miRNA: 3'- -GGA----AAACUAC-------------CGGGUGAGG--AUAGAag -5' |
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33287 | 3' | -48.5 | NC_007605.1 | + | 26679 | 0.68 | 0.997433 |
Target: 5'- cCCUgaccUUUGGUGaagucacaaacaaGCCCACUCCccUGUCUg- -3' miRNA: 3'- -GGA----AAACUAC-------------CGGGUGAGG--AUAGAag -5' |
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33287 | 3' | -48.5 | NC_007605.1 | + | 29748 | 0.68 | 0.997433 |
Target: 5'- cCCUgaccUUUGGUGaagucacaaacaaGCCCACUCCccUGUCUg- -3' miRNA: 3'- -GGA----AAACUAC-------------CGGGUGAGG--AUAGAag -5' |
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33287 | 3' | -48.5 | NC_007605.1 | + | 32817 | 0.68 | 0.997433 |
Target: 5'- cCCUgaccUUUGGUGaagucacaaacaaGCCCACUCCccUGUCUg- -3' miRNA: 3'- -GGA----AAACUAC-------------CGGGUGAGG--AUAGAag -5' |
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33287 | 3' | -48.5 | NC_007605.1 | + | 63500 | 0.67 | 0.998798 |
Target: 5'- -----cGGUGGUCCACgggCCUGUggUCa -3' miRNA: 3'- ggaaaaCUACCGGGUGa--GGAUAgaAG- -5' |
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33287 | 3' | -48.5 | NC_007605.1 | + | 97306 | 0.66 | 0.999582 |
Target: 5'- aCCUUguuaUGAcaaaGCCCGCUCCUAcCUg- -3' miRNA: 3'- -GGAAa---ACUac--CGGGUGAGGAUaGAag -5' |
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33287 | 3' | -48.5 | NC_007605.1 | + | 150475 | 0.66 | 0.999582 |
Target: 5'- cCCUggaGAUGGCCCugUgCC-AUCa-- -3' miRNA: 3'- -GGAaaaCUACCGGGugA-GGaUAGaag -5' |
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33287 | 3' | -48.5 | NC_007605.1 | + | 8867 | 0.66 | 0.999198 |
Target: 5'- -----aGAguucacuGCCCGCUCCUugAUCUUCa -3' miRNA: 3'- ggaaaaCUac-----CGGGUGAGGA--UAGAAG- -5' |
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33287 | 3' | -48.5 | NC_007605.1 | + | 3049 | 0.66 | 0.999351 |
Target: 5'- gCCUggugcUUGAUGGCCCccaGCUCCccGUUa-- -3' miRNA: 3'- -GGAa----AACUACCGGG---UGAGGa-UAGaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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