miRNA display CGI


Results 21 - 40 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33287 5' -54.2 NC_007605.1 + 56831 0.66 0.95814
Target:  5'- gCGGGAGAGuuccauaagcaccuGGCcgcaaagcuggaGGCCUGCCUGCCGu -3'
miRNA:   3'- -GCCUUCUU--------------CCGua----------UCGGAUGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 149916 0.66 0.957008
Target:  5'- aGGAgaaAGAAGGUAacuugaAGCUgaguaucugGCCCACCGa -3'
miRNA:   3'- gCCU---UCUUCCGUa-----UCGGa--------UGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 36308 0.66 0.957008
Target:  5'- aGGuuGuuGGCAUGuaCCUGCCCAaCCAc -3'
miRNA:   3'- gCCuuCuuCCGUAUc-GGAUGGGU-GGU- -5'
33287 5' -54.2 NC_007605.1 + 167844 0.66 0.957008
Target:  5'- aCGGAGGcggcGGCAUAGUCaugauuCCgGCCAu -3'
miRNA:   3'- -GCCUUCuu--CCGUAUCGGau----GGgUGGU- -5'
33287 5' -54.2 NC_007605.1 + 63394 0.66 0.957008
Target:  5'- cCGGAcuuuGGgcGGCugGUGGCCga-CCGCCGc -3'
miRNA:   3'- -GCCU----UCuuCCG--UAUCGGaugGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 132377 0.66 0.957008
Target:  5'- gGGGAGAGGGUgccguGCCggACCCaggcuGCCGu -3'
miRNA:   3'- gCCUUCUUCCGuau--CGGa-UGGG-----UGGU- -5'
33287 5' -54.2 NC_007605.1 + 153554 0.66 0.956626
Target:  5'- uGGGAGAggAGGCuggccGCCUccuuuacccgggcAUCCGCCAg -3'
miRNA:   3'- gCCUUCU--UCCGuau--CGGA-------------UGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 51886 0.66 0.953085
Target:  5'- aGGGccgccaaaccuaAGGAGGCcaGGCCc-CCCACCGu -3'
miRNA:   3'- gCCU------------UCUUCCGuaUCGGauGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 122253 0.66 0.953085
Target:  5'- uCGG-AGAAGGCAaaGGCCaccaGCCCguucACCAa -3'
miRNA:   3'- -GCCuUCUUCCGUa-UCGGa---UGGG----UGGU- -5'
33287 5' -54.2 NC_007605.1 + 74453 0.66 0.95268
Target:  5'- gCGGAGGAGGccuuccccuuccuGCGcGGCCUcacgccGCUCACCGc -3'
miRNA:   3'- -GCCUUCUUC-------------CGUaUCGGA------UGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 53827 0.66 0.948927
Target:  5'- uGGAAgucGAGGGCAUGGCCcagaACuCCAUgGa -3'
miRNA:   3'- gCCUU---CUUCCGUAUCGGa---UG-GGUGgU- -5'
33287 5' -54.2 NC_007605.1 + 155329 0.66 0.948927
Target:  5'- gGGGAGGAGGCcgGGCgCUAuaggcgcauCCUGCUg -3'
miRNA:   3'- gCCUUCUUCCGuaUCG-GAU---------GGGUGGu -5'
33287 5' -54.2 NC_007605.1 + 153454 0.66 0.948499
Target:  5'- aGuGAAGggGGCGagaaagacggagaUGGCCgaggACCCgGCCu -3'
miRNA:   3'- gC-CUUCuuCCGU-------------AUCGGa---UGGG-UGGu -5'
33287 5' -54.2 NC_007605.1 + 60259 0.66 0.94408
Target:  5'- aGGAGgcgccuucuGAGGGUggccgugucggccGUGGCCaggGCCCACCu -3'
miRNA:   3'- gCCUU---------CUUCCG-------------UAUCGGa--UGGGUGGu -5'
33287 5' -54.2 NC_007605.1 + 159731 0.67 0.939897
Target:  5'- gCGaGGAGGAGGCGUcccgggagAGCCcggaggUGCCCcgGCCGg -3'
miRNA:   3'- -GC-CUUCUUCCGUA--------UCGG------AUGGG--UGGU- -5'
33287 5' -54.2 NC_007605.1 + 59086 0.67 0.939897
Target:  5'- uGGAcgAGggGGCGcGGCUggaUGCCCucaugcGCCAa -3'
miRNA:   3'- gCCU--UCuuCCGUaUCGG---AUGGG------UGGU- -5'
33287 5' -54.2 NC_007605.1 + 104067 0.67 0.939897
Target:  5'- uGGAGGAggGGGCu--GCC-ACCC-CCGg -3'
miRNA:   3'- gCCUUCU--UCCGuauCGGaUGGGuGGU- -5'
33287 5' -54.2 NC_007605.1 + 54209 0.67 0.939897
Target:  5'- uGGAGGAggAGGCAgguUAGCCUGgCCugggUCAu -3'
miRNA:   3'- gCCUUCU--UCCGU---AUCGGAUgGGu---GGU- -5'
33287 5' -54.2 NC_007605.1 + 119523 0.67 0.939897
Target:  5'- aGGAGGggGcCAUGGCUgccauUCUACCAg -3'
miRNA:   3'- gCCUUCuuCcGUAUCGGau---GGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 51038 0.67 0.939897
Target:  5'- uCGacGGGAGGCAUAGCUc-CCaCACCAu -3'
miRNA:   3'- -GCcuUCUUCCGUAUCGGauGG-GUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.