miRNA display CGI


Results 41 - 60 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33288 3' -52.8 NC_007605.1 + 15564 0.66 0.984262
Target:  5'- aGGGGCCUgGCUCC--GCCGgGugg-CCc -3'
miRNA:   3'- -CCCCGGA-CGGGGuuUGGUgUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 50358 0.66 0.982339
Target:  5'- cGGGGCCgcggugggcUGCCCCcGAggACGGGcgCCg -3'
miRNA:   3'- -CCCCGG---------ACGGGGuUUggUGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 136649 0.67 0.975506
Target:  5'- cGGGCCUcuuugGCCCCccuCCACccGUgccUCCu -3'
miRNA:   3'- cCCCGGA-----CGGGGuuuGGUGuuUA---AGG- -5'
33288 3' -52.8 NC_007605.1 + 56741 0.67 0.972848
Target:  5'- uGGGGaCCUGCagauguCCCG-ACCAguccuuuaaGAAUUCCa -3'
miRNA:   3'- -CCCC-GGACG------GGGUuUGGUg--------UUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 62798 0.67 0.972848
Target:  5'- cGGGCgaGCCCCccguCCACcucugCCa -3'
miRNA:   3'- cCCCGgaCGGGGuuu-GGUGuuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 100371 0.67 0.972848
Target:  5'- cGGGCUgcucaUGCCCguGGgccuCCACGAAgcugUCCg -3'
miRNA:   3'- cCCCGG-----ACGGGguUU----GGUGUUUa---AGG- -5'
33288 3' -52.8 NC_007605.1 + 6265 0.67 0.975506
Target:  5'- cGGGGUCUcggaGCUCCuaggucAGACCACGAAaggUCa -3'
miRNA:   3'- -CCCCGGA----CGGGG------UUUGGUGUUUa--AGg -5'
33288 3' -52.8 NC_007605.1 + 61809 0.67 0.975506
Target:  5'- aGGGCCuccaucucUGCCgCCAucccGGCCAgGAAggCCu -3'
miRNA:   3'- cCCCGG--------ACGG-GGU----UUGGUgUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 32733 0.67 0.972848
Target:  5'- gGGGGaccaCUGCCCCu-GgUAUAAAguggUCCu -3'
miRNA:   3'- -CCCCg---GACGGGGuuUgGUGUUUa---AGG- -5'
33288 3' -52.8 NC_007605.1 + 29664 0.67 0.972848
Target:  5'- gGGGGaccaCUGCCCCu-GgUAUAAAguggUCCu -3'
miRNA:   3'- -CCCCg---GACGGGGuuUgGUGUUUa---AGG- -5'
33288 3' -52.8 NC_007605.1 + 26595 0.67 0.972848
Target:  5'- gGGGGaccaCUGCCCCu-GgUAUAAAguggUCCu -3'
miRNA:   3'- -CCCCg---GACGGGGuuUgGUGUUUa---AGG- -5'
33288 3' -52.8 NC_007605.1 + 99194 0.67 0.960128
Target:  5'- cGGGCCUcaGCaccuCCCAGGCCACcagccCCa -3'
miRNA:   3'- cCCCGGA--CG----GGGUUUGGUGuuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 58087 0.67 0.963634
Target:  5'- cGGGGCCgcggaGgCCgGGGCCGCGGAg--- -3'
miRNA:   3'- -CCCCGGa----CgGGgUUUGGUGUUUaagg -5'
33288 3' -52.8 NC_007605.1 + 101414 0.67 0.963634
Target:  5'- -uGGCCagGUCCC--GCCGCugGAGUUCCu -3'
miRNA:   3'- ccCCGGa-CGGGGuuUGGUG--UUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 62373 0.67 0.966919
Target:  5'- aGGuGGCCguuggGCCagAGACCGCGAGcaCCu -3'
miRNA:   3'- -CC-CCGGa----CGGggUUUGGUGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 36621 0.67 0.969988
Target:  5'- cGGGGCCuuauuuUGCCaCAAGgcCCACAAAcagCCc -3'
miRNA:   3'- -CCCCGG------ACGGgGUUU--GGUGUUUaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 53193 0.67 0.960128
Target:  5'- cGGGGCUccauUGCCCCAu-CCAguuGGUggugCCg -3'
miRNA:   3'- -CCCCGG----ACGGGGUuuGGUgu-UUAa---GG- -5'
33288 3' -52.8 NC_007605.1 + 47767 0.67 0.960128
Target:  5'- gGGGGCCUuguccGCUgggCCAggUCACAGA--CCa -3'
miRNA:   3'- -CCCCGGA-----CGG---GGUuuGGUGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 153937 0.67 0.960128
Target:  5'- aGGGCCUGCagguuggcggggCUCAGGgccuCCACGAAggCCu -3'
miRNA:   3'- cCCCGGACG------------GGGUUU----GGUGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 155984 0.67 0.960128
Target:  5'- gGGGGCUgagGCCCCcg--CACA---UCCa -3'
miRNA:   3'- -CCCCGGa--CGGGGuuugGUGUuuaAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.