miRNA display CGI


Results 61 - 80 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33288 3' -52.8 NC_007605.1 + 54836 0.67 0.969988
Target:  5'- uGGGCgUGCCCCcagcGCCuuccuAAUUCUg -3'
miRNA:   3'- cCCCGgACGGGGuu--UGGugu--UUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 69538 0.67 0.966919
Target:  5'- gGGGGgCUGUaCCUggGCCAU----UCCa -3'
miRNA:   3'- -CCCCgGACG-GGGuuUGGUGuuuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 99194 0.67 0.960128
Target:  5'- cGGGCCUcaGCaccuCCCAGGCCACcagccCCa -3'
miRNA:   3'- cCCCGGA--CG----GGGUUUGGUGuuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 81523 0.67 0.960128
Target:  5'- cGGGGCaggccuuUGCaCCCGuuaGACCACAAcacaugCCa -3'
miRNA:   3'- -CCCCGg------ACG-GGGU---UUGGUGUUuaa---GG- -5'
33288 3' -52.8 NC_007605.1 + 101414 0.67 0.963634
Target:  5'- -uGGCCagGUCCC--GCCGCugGAGUUCCu -3'
miRNA:   3'- ccCCGGa-CGGGGuuUGGUG--UUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 58087 0.67 0.963634
Target:  5'- cGGGGCCgcggaGgCCgGGGCCGCGGAg--- -3'
miRNA:   3'- -CCCCGGa----CgGGgUUUGGUGUUUaagg -5'
33288 3' -52.8 NC_007605.1 + 55762 0.67 0.969691
Target:  5'- uGGGGCCgagGCCacaccggCCAGGCC-CAAcAUUgCCu -3'
miRNA:   3'- -CCCCGGa--CGG-------GGUUUGGuGUU-UAA-GG- -5'
33288 3' -52.8 NC_007605.1 + 132451 0.67 0.969691
Target:  5'- cGGGGUCUGUgugCCCucuCCACAcacgaccuggcaaAAUUUCa -3'
miRNA:   3'- -CCCCGGACG---GGGuuuGGUGU-------------UUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 36621 0.67 0.969988
Target:  5'- cGGGGCCuuauuuUGCCaCAAGgcCCACAAAcagCCc -3'
miRNA:   3'- -CCCCGG------ACGGgGUUU--GGUGUUUaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 61809 0.67 0.975506
Target:  5'- aGGGCCuccaucucUGCCgCCAucccGGCCAgGAAggCCu -3'
miRNA:   3'- cCCCGG--------ACGG-GGU----UUGGUgUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 100371 0.67 0.972848
Target:  5'- cGGGCUgcucaUGCCCguGGgccuCCACGAAgcugUCCg -3'
miRNA:   3'- cCCCGG-----ACGGGguUU----GGUGUUUa---AGG- -5'
33288 3' -52.8 NC_007605.1 + 62798 0.67 0.972848
Target:  5'- cGGGCgaGCCCCccguCCACcucugCCa -3'
miRNA:   3'- cCCCGgaCGGGGuuu-GGUGuuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 56741 0.67 0.972848
Target:  5'- uGGGGaCCUGCagauguCCCG-ACCAguccuuuaaGAAUUCCa -3'
miRNA:   3'- -CCCC-GGACG------GGGUuUGGUg--------UUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 26595 0.67 0.972848
Target:  5'- gGGGGaccaCUGCCCCu-GgUAUAAAguggUCCu -3'
miRNA:   3'- -CCCCg---GACGGGGuuUgGUGUUUa---AGG- -5'
33288 3' -52.8 NC_007605.1 + 23526 0.67 0.972848
Target:  5'- gGGGGaccaCUGCCCCu-GgUAUAAAguggUCCu -3'
miRNA:   3'- -CCCCg---GACGGGGuuUgGUGUUUa---AGG- -5'
33288 3' -52.8 NC_007605.1 + 20457 0.67 0.972848
Target:  5'- gGGGGaccaCUGCCCCu-GgUAUAAAguggUCCu -3'
miRNA:   3'- -CCCCg---GACGGGGuuUgGUGUUUa---AGG- -5'
33288 3' -52.8 NC_007605.1 + 17388 0.67 0.972848
Target:  5'- gGGGGaccaCUGCCCCu-GgUAUAAAguggUCCu -3'
miRNA:   3'- -CCCCg---GACGGGGuuUgGUGUUUa---AGG- -5'
33288 3' -52.8 NC_007605.1 + 14319 0.67 0.972848
Target:  5'- gGGGGaccaCUGCCCCu-GgUAUAAAguggUCCu -3'
miRNA:   3'- -CCCCg---GACGGGGuuUgGUGUUUa---AGG- -5'
33288 3' -52.8 NC_007605.1 + 98336 0.67 0.972571
Target:  5'- cGGaGCCUGCcggaguuuucuccCCCAGAUCACGGcugUCUa -3'
miRNA:   3'- cCC-CGGACG-------------GGGUUUGGUGUUua-AGG- -5'
33288 3' -52.8 NC_007605.1 + 171391 0.67 0.969988
Target:  5'- aGGcGGUCgcGCCCCcGGCCGCGccagCCa -3'
miRNA:   3'- -CC-CCGGa-CGGGGuUUGGUGUuuaaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.