miRNA display CGI


Results 101 - 120 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33288 3' -52.8 NC_007605.1 + 154467 0.67 0.960128
Target:  5'- -cGGCCUGCgCCCGggagaaGACUAUGAG-UCCu -3'
miRNA:   3'- ccCCGGACG-GGGU------UUGGUGUUUaAGG- -5'
33288 3' -52.8 NC_007605.1 + 98414 0.67 0.960128
Target:  5'- aGGGGuCCUGgCCCAaaauAACCACcuuAAUaUCa -3'
miRNA:   3'- -CCCC-GGACgGGGU----UUGGUGu--UUAaGG- -5'
33288 3' -52.8 NC_007605.1 + 143244 0.67 0.972848
Target:  5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3'
miRNA:   3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 143142 0.67 0.972848
Target:  5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3'
miRNA:   3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 142837 0.67 0.972848
Target:  5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3'
miRNA:   3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 142735 0.67 0.972848
Target:  5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3'
miRNA:   3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 142633 0.67 0.972848
Target:  5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3'
miRNA:   3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 142531 0.67 0.972848
Target:  5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3'
miRNA:   3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 142327 0.67 0.972848
Target:  5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3'
miRNA:   3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 153937 0.67 0.960128
Target:  5'- aGGGCCUGCagguuggcggggCUCAGGgccuCCACGAAggCCu -3'
miRNA:   3'- cCCCGGACG------------GGGUUU----GGUGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 143357 0.67 0.972848
Target:  5'- cGGGGucCCUGCCUgGcACCAgGG--UCCg -3'
miRNA:   3'- -CCCC--GGACGGGgUuUGGUgUUuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 40010 0.67 0.972293
Target:  5'- cGGGGCUgggGUCCaggGGACCACGcccccacccugcAUUCCa -3'
miRNA:   3'- -CCCCGGa--CGGGg--UUUGGUGUu-----------UAAGG- -5'
33288 3' -52.8 NC_007605.1 + 36293 0.67 0.960128
Target:  5'- ---aCCUGCCCa--ACCACAGGUUCa -3'
miRNA:   3'- ccccGGACGGGguuUGGUGUUUAAGg -5'
33288 3' -52.8 NC_007605.1 + 166982 0.67 0.960128
Target:  5'- -cGGCCUGCCCgGcucuuCUACGGAgaCCa -3'
miRNA:   3'- ccCCGGACGGGgUuu---GGUGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 137243 0.67 0.963293
Target:  5'- gGGGGCCUGUgugCCCGGggguggaggcugcGCCugAGcugCCu -3'
miRNA:   3'- -CCCCGGACG---GGGUU-------------UGGugUUuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 107974 0.67 0.963634
Target:  5'- aGGGCCUagGCCUCGgcucuGACCuaGCuccAGUUCCa -3'
miRNA:   3'- cCCCGGA--CGGGGU-----UUGG--UGu--UUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 134523 0.67 0.963634
Target:  5'- gGGGGUCUGCCgCCAccgugGGCCuCAcguAGUgggCCc -3'
miRNA:   3'- -CCCCGGACGG-GGU-----UUGGuGU---UUAa--GG- -5'
33288 3' -52.8 NC_007605.1 + 133482 0.67 0.963634
Target:  5'- gGGGGaCCUGaccugcaugcuCUCCAGGCCAuCAGAgaaggCCa -3'
miRNA:   3'- -CCCC-GGAC-----------GGGGUUUGGU-GUUUaa---GG- -5'
33288 3' -52.8 NC_007605.1 + 40168 0.67 0.972848
Target:  5'- gGGGGCgUcccgggaccccaGCCCCcAGCCgGCAA--UCCa -3'
miRNA:   3'- -CCCCGgA------------CGGGGuUUGG-UGUUuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 34510 0.67 0.972848
Target:  5'- aGGGGCUcuggggUGCCCgAggUCcCuGGUUCCu -3'
miRNA:   3'- -CCCCGG------ACGGGgUuuGGuGuUUAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.