miRNA display CGI


Results 21 - 40 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33288 3' -52.8 NC_007605.1 + 12942 0.73 0.739643
Target:  5'- cGGGGCCcagGCCCCAGAgUcCAGAggUCa -3'
miRNA:   3'- -CCCCGGa--CGGGGUUUgGuGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 16010 0.73 0.739643
Target:  5'- cGGGGCCcagGCCCCAGAgUcCAGAggUCa -3'
miRNA:   3'- -CCCCGGa--CGGGGUUUgGuGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 19079 0.73 0.739643
Target:  5'- cGGGGCCcagGCCCCAGAgUcCAGAggUCa -3'
miRNA:   3'- -CCCCGGa--CGGGGUUUgGuGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 22148 0.73 0.739643
Target:  5'- cGGGGCCcagGCCCCAGAgUcCAGAggUCa -3'
miRNA:   3'- -CCCCGGa--CGGGGUUUgGuGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 25217 0.73 0.739643
Target:  5'- cGGGGCCcagGCCCCAGAgUcCAGAggUCa -3'
miRNA:   3'- -CCCCGGa--CGGGGUUUgGuGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 28286 0.73 0.739643
Target:  5'- cGGGGCCcagGCCCCAGAgUcCAGAggUCa -3'
miRNA:   3'- -CCCCGGa--CGGGGUUUgGuGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 31355 0.73 0.739643
Target:  5'- cGGGGCCcagGCCCCAGAgUcCAGAggUCa -3'
miRNA:   3'- -CCCCGGa--CGGGGUUUgGuGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 34424 0.73 0.739643
Target:  5'- cGGGGCCcagGCCCCAGAgUcCAGAggUCa -3'
miRNA:   3'- -CCCCGGa--CGGGGUUUgGuGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 159326 0.72 0.814702
Target:  5'- cGGGCCaGCuCCCAguaGACCACG---UCCc -3'
miRNA:   3'- cCCCGGaCG-GGGU---UUGGUGUuuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 40026 0.72 0.796777
Target:  5'- aGGGCgUGCCCCGcuuGCCugG---UCCu -3'
miRNA:   3'- cCCCGgACGGGGUu--UGGugUuuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 136945 0.72 0.80582
Target:  5'- cGGGGCCUuacggauuucaGCCUCAucaaAGCUACGAAgugCCc -3'
miRNA:   3'- -CCCCGGA-----------CGGGGU----UUGGUGUUUaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 171300 0.72 0.815581
Target:  5'- gGGGGCCgcgggggaaggccacGCCCCcu-CCACuuuUUCCa -3'
miRNA:   3'- -CCCCGGa--------------CGGGGuuuGGUGuuuAAGG- -5'
33288 3' -52.8 NC_007605.1 + 51256 0.72 0.80582
Target:  5'- uGGGCCUGCCagGGGCCACc--UUCUc -3'
miRNA:   3'- cCCCGGACGGggUUUGGUGuuuAAGG- -5'
33288 3' -52.8 NC_007605.1 + 61271 0.72 0.809393
Target:  5'- cGGGGCCUGCCacaggcggcuguagCGGACCcauaGCAGAgaCCu -3'
miRNA:   3'- -CCCCGGACGGg-------------GUUUGG----UGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 62834 0.72 0.814702
Target:  5'- uGGGcGUCUGCCCCu--CCGCuaccgCCg -3'
miRNA:   3'- -CCC-CGGACGGGGuuuGGUGuuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 170763 0.72 0.815581
Target:  5'- gGGGGCCgcgggggaaggccacGCCCCcu-CCACuuuUUCCa -3'
miRNA:   3'- -CCCCGGa--------------CGGGGuuuGGUGuuuAAGG- -5'
33288 3' -52.8 NC_007605.1 + 91934 0.72 0.796777
Target:  5'- aGGGCCgagGCCCCGcGCCuGCGGGccCCa -3'
miRNA:   3'- cCCCGGa--CGGGGUuUGG-UGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 151067 0.72 0.814702
Target:  5'- uGGGCUcaggcgGCCCCAGACaCGCAAuuugCCc -3'
miRNA:   3'- cCCCGGa-----CGGGGUUUG-GUGUUuaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 62936 0.72 0.823413
Target:  5'- cGGGGCugCUGCCCCcuccGGCC-CGGcgUCUa -3'
miRNA:   3'- -CCCCG--GACGGGGu---UUGGuGUUuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 134680 0.72 0.823413
Target:  5'- -uGGCCUccccggugGCCCCAAGCUgaGCcAGUUCCu -3'
miRNA:   3'- ccCCGGA--------CGGGGUUUGG--UGuUUAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.