miRNA display CGI


Results 81 - 100 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33288 3' -52.8 NC_007605.1 + 22235 0.69 0.923622
Target:  5'- cGGGCg-GCCCCAGagGCCG---GUUCCu -3'
miRNA:   3'- cCCCGgaCGGGGUU--UGGUguuUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 25304 0.69 0.923622
Target:  5'- cGGGCg-GCCCCAGagGCCG---GUUCCu -3'
miRNA:   3'- cCCCGgaCGGGGUU--UGGUguuUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 110309 0.69 0.929032
Target:  5'- uGGGCCUGaCCUCGugUgGCGAGagUCCg -3'
miRNA:   3'- cCCCGGAC-GGGGUuuGgUGUUUa-AGG- -5'
33288 3' -52.8 NC_007605.1 + 159868 0.69 0.931128
Target:  5'- ---cCCUGCCCCGuugcaccgauagcauGGCCGCcaGAGUUCCa -3'
miRNA:   3'- ccccGGACGGGGU---------------UUGGUG--UUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 100307 0.69 0.912067
Target:  5'- -uGGCU--CCCCcGGCCGCAAAUUCUg -3'
miRNA:   3'- ccCCGGacGGGGuUUGGUGUUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 45127 0.69 0.917967
Target:  5'- aGGGCCUgGCUgCAGAugugcaccCCGCAAGacUUCCa -3'
miRNA:   3'- cCCCGGA-CGGgGUUU--------GGUGUUU--AAGG- -5'
33288 3' -52.8 NC_007605.1 + 153512 0.69 0.923622
Target:  5'- aGGaaCUGCCCCAGAuCCACGAccgcaUCCa -3'
miRNA:   3'- cCCcgGACGGGGUUU-GGUGUUua---AGG- -5'
33288 3' -52.8 NC_007605.1 + 61067 0.69 0.929032
Target:  5'- cGGGGCCc-CUCCGAuGCCugGGAgUCCc -3'
miRNA:   3'- -CCCCGGacGGGGUU-UGGugUUUaAGG- -5'
33288 3' -52.8 NC_007605.1 + 134601 0.69 0.934198
Target:  5'- aGGGaGCCUGCCCau--CCAuCAAcUUCa -3'
miRNA:   3'- -CCC-CGGACGGGguuuGGU-GUUuAAGg -5'
33288 3' -52.8 NC_007605.1 + 34511 0.69 0.923622
Target:  5'- cGGGCg-GCCCCAGagGCCG---GUUCCu -3'
miRNA:   3'- cCCCGgaCGGGGUU--UGGUguuUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 31442 0.69 0.923622
Target:  5'- cGGGCg-GCCCCAGagGCCG---GUUCCu -3'
miRNA:   3'- cCCCGgaCGGGGUU--UGGUguuUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 28373 0.69 0.923622
Target:  5'- cGGGCg-GCCCCAGagGCCG---GUUCCu -3'
miRNA:   3'- cCCCGgaCGGGGUU--UGGUguuUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 19166 0.69 0.923622
Target:  5'- cGGGCg-GCCCCAGagGCCG---GUUCCu -3'
miRNA:   3'- cCCCGgaCGGGGUU--UGGUguuUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 72292 0.68 0.943797
Target:  5'- aGGGCCagaUGCaggagcugaCCCAGGCgACGAGaUCCa -3'
miRNA:   3'- cCCCGG---ACG---------GGGUUUGgUGUUUaAGG- -5'
33288 3' -52.8 NC_007605.1 + 159493 0.68 0.956395
Target:  5'- cGGGCCgggcucucgUGCCCCAGccgGCCGgGGcaccUCCg -3'
miRNA:   3'- cCCCGG---------ACGGGGUU---UGGUgUUua--AGG- -5'
33288 3' -52.8 NC_007605.1 + 62543 0.68 0.952432
Target:  5'- aGGGCC-GCCuCCAGAUgGCcGAggCCg -3'
miRNA:   3'- cCCCGGaCGG-GGUUUGgUGuUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 29028 0.68 0.952432
Target:  5'- uGGGCCUgGCUCC---CCAUAGAcUCCc -3'
miRNA:   3'- cCCCGGA-CGGGGuuuGGUGUUUaAGG- -5'
33288 3' -52.8 NC_007605.1 + 82296 0.68 0.939119
Target:  5'- aGGGGCCguggGUaCCCGAGCaguggauGUUCCa -3'
miRNA:   3'- -CCCCGGa---CG-GGGUUUGguguu--UAAGG- -5'
33288 3' -52.8 NC_007605.1 + 134931 0.68 0.939119
Target:  5'- gGGGGCgaagGCgugCCCGAACC-CGGGUUUCa -3'
miRNA:   3'- -CCCCGga--CG---GGGUUUGGuGUUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 160907 0.68 0.956395
Target:  5'- uGGG-CUGCCCCGGGCC-CAcc--CCa -3'
miRNA:   3'- cCCCgGACGGGGUUUGGuGUuuaaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.