Results 101 - 120 of 286 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
33288 | 3' | -52.8 | NC_007605.1 | + | 82201 | 0.68 | 0.943797 |
Target: 5'- cGGGCCcauacuaGCCCUcaacgGGGCCACGGGUgCCc -3' miRNA: 3'- cCCCGGa------CGGGG-----UUUGGUGUUUAaGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 88816 | 0.68 | 0.943797 |
Target: 5'- uGGGCCUGUCUCcGAUUGCAGAUg-- -3' miRNA: 3'- cCCCGGACGGGGuUUGGUGUUUAagg -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 71099 | 0.68 | 0.943797 |
Target: 5'- cGGGGCuCUGCaCCCugguGGCCAUgcuagaAGAgaCCa -3' miRNA: 3'- -CCCCG-GACG-GGGu---UUGGUG------UUUaaGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 159999 | 0.68 | 0.943797 |
Target: 5'- -cGGCCgccccggGCCCgGGACCGCGcccUCCu -3' miRNA: 3'- ccCCGGa------CGGGgUUUGGUGUuuaAGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 128829 | 0.68 | 0.943797 |
Target: 5'- cGGGGCU--CCCCA-GCCACAGcacCCu -3' miRNA: 3'- -CCCCGGacGGGGUuUGGUGUUuaaGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 16753 | 0.68 | 0.952432 |
Target: 5'- uGGGCCUgGCUCC---CCAUAGAcUCCc -3' miRNA: 3'- cCCCGGA-CGGGGuuuGGUGUUUaAGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 19822 | 0.68 | 0.952432 |
Target: 5'- uGGGCCUgGCUCC---CCAUAGAcUCCc -3' miRNA: 3'- cCCCGGA-CGGGGuuuGGUGUUUaAGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 82296 | 0.68 | 0.939119 |
Target: 5'- aGGGGCCguggGUaCCCGAGCaguggauGUUCCa -3' miRNA: 3'- -CCCCGGa---CG-GGGUUUGguguu--UAAGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 134931 | 0.68 | 0.939119 |
Target: 5'- gGGGGCgaagGCgugCCCGAACC-CGGGUUUCa -3' miRNA: 3'- -CCCCGga--CG---GGGUUUGGuGUUUAAGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 72292 | 0.68 | 0.943797 |
Target: 5'- aGGGCCagaUGCaggagcugaCCCAGGCgACGAGaUCCa -3' miRNA: 3'- cCCCGG---ACG---------GGGUUUGgUGUUUaAGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 92302 | 0.68 | 0.947801 |
Target: 5'- aGGGCucugauuaagacaCUGCCCCGGGCCuccuacUCCa -3' miRNA: 3'- cCCCG-------------GACGGGGUUUGGuguuuaAGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 159493 | 0.68 | 0.956395 |
Target: 5'- cGGGCCgggcucucgUGCCCCAGccgGCCGgGGcaccUCCg -3' miRNA: 3'- cCCCGG---------ACGGGGUU---UGGUgUUua--AGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 160907 | 0.68 | 0.956395 |
Target: 5'- uGGG-CUGCCCCGGGCC-CAcc--CCa -3' miRNA: 3'- cCCCgGACGGGGUUUGGuGUuuaaGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 62543 | 0.68 | 0.952432 |
Target: 5'- aGGGCC-GCCuCCAGAUgGCcGAggCCg -3' miRNA: 3'- cCCCGGaCGG-GGUUUGgUGuUUaaGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 56500 | 0.68 | 0.952432 |
Target: 5'- cGGGCC-GCCuCCAggUCAaauuUUCCa -3' miRNA: 3'- cCCCGGaCGG-GGUuuGGUguuuAAGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 35166 | 0.68 | 0.952432 |
Target: 5'- uGGGCCUgGCUCC---CCAUAGAcUCCc -3' miRNA: 3'- cCCCGGA-CGGGGuuuGGUGUUUaAGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 32097 | 0.68 | 0.952432 |
Target: 5'- uGGGCCUgGCUCC---CCAUAGAcUCCc -3' miRNA: 3'- cCCCGGA-CGGGGuuuGGUGUUUaAGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 29028 | 0.68 | 0.952432 |
Target: 5'- uGGGCCUgGCUCC---CCAUAGAcUCCc -3' miRNA: 3'- cCCCGGA-CGGGGuuuGGUGUUUaAGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 22891 | 0.68 | 0.952432 |
Target: 5'- uGGGCCUgGCUCC---CCAUAGAcUCCc -3' miRNA: 3'- cCCCGGA-CGGGGuuuGGUGUUUaAGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 45462 | 0.68 | 0.939119 |
Target: 5'- gGGGGCCagGCCaCCAuGCUAUcgGUUUa -3' miRNA: 3'- -CCCCGGa-CGG-GGUuUGGUGuuUAAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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