miRNA display CGI


Results 121 - 140 of 286 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33288 3' -52.8 NC_007605.1 + 13684 0.68 0.952432
Target:  5'- uGGGCCUgGCUCC---CCAUAGAcUCCc -3'
miRNA:   3'- cCCCGGA-CGGGGuuuGGUGUUUaAGG- -5'
33288 3' -52.8 NC_007605.1 + 25959 0.68 0.952432
Target:  5'- uGGGCCUgGCUCC---CCAUAGAcUCCc -3'
miRNA:   3'- cCCCGGA-CGGGGuuuGGUGUUUaAGG- -5'
33288 3' -52.8 NC_007605.1 + 52653 0.68 0.939119
Target:  5'- gGGGGCaUGCCCUcAACCAC-----CCg -3'
miRNA:   3'- -CCCCGgACGGGGuUUGGUGuuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 48651 0.68 0.939119
Target:  5'- aGGGCC--CCCCGGcccCCACGAGcUCCu -3'
miRNA:   3'- cCCCGGacGGGGUUu--GGUGUUUaAGG- -5'
33288 3' -52.8 NC_007605.1 + 133225 0.68 0.952432
Target:  5'- cGGGGCCUGuguCCCUggGCagucggGCGGggUCUa -3'
miRNA:   3'- -CCCCGGAC---GGGGuuUGg-----UGUUuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 136837 0.68 0.951611
Target:  5'- gGGGGCCaaagagGCCCggCAAGCCAaaguaggCCg -3'
miRNA:   3'- -CCCCGGa-----CGGG--GUUUGGUguuuaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 82818 0.68 0.948234
Target:  5'- cGGGGCCUGCCauggauugaCAAAUCAaGAA--CCu -3'
miRNA:   3'- -CCCCGGACGGg--------GUUUGGUgUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 45622 0.68 0.947801
Target:  5'- aGGGGCCUguacaccGCCCUGugcuGCCACcug--CCu -3'
miRNA:   3'- -CCCCGGA-------CGGGGUu---UGGUGuuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 92302 0.68 0.947801
Target:  5'- aGGGCucugauuaagacaCUGCCCCGGGCCuccuacUCCa -3'
miRNA:   3'- cCCCG-------------GACGGGGUUUGGuguuuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 71099 0.68 0.943797
Target:  5'- cGGGGCuCUGCaCCCugguGGCCAUgcuagaAGAgaCCa -3'
miRNA:   3'- -CCCCG-GACG-GGGu---UUGGUG------UUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 82201 0.68 0.943797
Target:  5'- cGGGCCcauacuaGCCCUcaacgGGGCCACGGGUgCCc -3'
miRNA:   3'- cCCCGGa------CGGGG-----UUUGGUGUUUAaGG- -5'
33288 3' -52.8 NC_007605.1 + 100253 0.68 0.948234
Target:  5'- aGGGGCaCaGCaCCAAgcuccGCCACGuAUUCCc -3'
miRNA:   3'- -CCCCG-GaCGgGGUU-----UGGUGUuUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 88816 0.68 0.943797
Target:  5'- uGGGCCUGUCUCcGAUUGCAGAUg-- -3'
miRNA:   3'- cCCCGGACGGGGuUUGGUGUUUAagg -5'
33288 3' -52.8 NC_007605.1 + 76280 0.68 0.943797
Target:  5'- uGGaGGCCUGUCCaCAcauacGCUACGccUUCCa -3'
miRNA:   3'- -CC-CCGGACGGG-GUu----UGGUGUuuAAGG- -5'
33288 3' -52.8 NC_007605.1 + 63208 0.68 0.941955
Target:  5'- aGGaGGCCUGCgcguguuccucaaCCAGcCCACGAAcgUCCc -3'
miRNA:   3'- -CC-CCGGACGg------------GGUUuGGUGUUUa-AGG- -5'
33288 3' -52.8 NC_007605.1 + 45462 0.68 0.939119
Target:  5'- gGGGGCCagGCCaCCAuGCUAUcgGUUUa -3'
miRNA:   3'- -CCCCGGa-CGG-GGUuUGGUGuuUAAGg -5'
33288 3' -52.8 NC_007605.1 + 6265 0.67 0.975506
Target:  5'- cGGGGUCUcggaGCUCCuaggucAGACCACGAAaggUCa -3'
miRNA:   3'- -CCCCGGA----CGGGG------UUUGGUGUUUa--AGg -5'
33288 3' -52.8 NC_007605.1 + 153937 0.67 0.960128
Target:  5'- aGGGCCUGCagguuggcggggCUCAGGgccuCCACGAAggCCu -3'
miRNA:   3'- cCCCGGACG------------GGGUUU----GGUGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 136649 0.67 0.975506
Target:  5'- cGGGCCUcuuugGCCCCccuCCACccGUgccUCCu -3'
miRNA:   3'- cCCCGGA-----CGGGGuuuGGUGuuUA---AGG- -5'
33288 3' -52.8 NC_007605.1 + 132451 0.67 0.969691
Target:  5'- cGGGGUCUGUgugCCCucuCCACAcacgaccuggcaaAAUUUCa -3'
miRNA:   3'- -CCCCGGACG---GGGuuuGGUGU-------------UUAAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.