miRNA display CGI


Results 61 - 80 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33288 3' -52.8 NC_007605.1 + 127428 0.7 0.886068
Target:  5'- -cGGCCcucuuccgUGCCUCGGGCCuCAAcgUCCg -3'
miRNA:   3'- ccCCGG--------ACGGGGUUUGGuGUUuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 34610 0.7 0.886068
Target:  5'- uGGGGCCUggGCCCCGAGgguggcuccCCuCAGAcaUUCUu -3'
miRNA:   3'- -CCCCGGA--CGGGGUUU---------GGuGUUU--AAGG- -5'
33288 3' -52.8 NC_007605.1 + 31541 0.7 0.886068
Target:  5'- uGGGGCCUggGCCCCGAGgguggcuccCCuCAGAcaUUCUu -3'
miRNA:   3'- -CCCCGGA--CGGGGUUU---------GGuGUUU--AAGG- -5'
33288 3' -52.8 NC_007605.1 + 75587 0.7 0.892922
Target:  5'- gGGGGUCcuugGCCCCAGAUCucucuuUAGGUgggCCa -3'
miRNA:   3'- -CCCCGGa---CGGGGUUUGGu-----GUUUAa--GG- -5'
33288 3' -52.8 NC_007605.1 + 50988 0.7 0.892922
Target:  5'- uGGGCUccaGCCCCAGGacaCACAAGccUCCu -3'
miRNA:   3'- cCCCGGa--CGGGGUUUg--GUGUUUa-AGG- -5'
33288 3' -52.8 NC_007605.1 + 158828 0.7 0.892922
Target:  5'- aGGGCCUGgCCgGggcuGACCGCG---UCCg -3'
miRNA:   3'- cCCCGGACgGGgU----UUGGUGUuuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 3855 0.7 0.892922
Target:  5'- aGGGGaCCUaCCCCGGGCUGCugug-CCa -3'
miRNA:   3'- -CCCC-GGAcGGGGUUUGGUGuuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 58567 0.7 0.899542
Target:  5'- gGGGGU--GCCCgGGGCCGCA---UCCu -3'
miRNA:   3'- -CCCCGgaCGGGgUUUGGUGUuuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 48847 0.7 0.905925
Target:  5'- cGGGCUggcgGCCCCGAAUCcggGCAGugcugCCg -3'
miRNA:   3'- cCCCGGa---CGGGGUUUGG---UGUUuaa--GG- -5'
33288 3' -52.8 NC_007605.1 + 3177 0.7 0.905925
Target:  5'- uGGGGCCgGCCa-GGGCCACGGGa-CCu -3'
miRNA:   3'- -CCCCGGaCGGggUUUGGUGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 164204 0.7 0.905925
Target:  5'- uGGGGaCCgGCUacgCGGGCCACAGGUgCCu -3'
miRNA:   3'- -CCCC-GGaCGGg--GUUUGGUGUUUAaGG- -5'
33288 3' -52.8 NC_007605.1 + 47794 0.7 0.905925
Target:  5'- -aGGCCaGCCCCAGAUC-CAGGagCCu -3'
miRNA:   3'- ccCCGGaCGGGGUUUGGuGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 100307 0.69 0.912067
Target:  5'- -uGGCU--CCCCcGGCCGCAAAUUCUg -3'
miRNA:   3'- ccCCGGacGGGGuUUGGUGUUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 105329 0.69 0.912067
Target:  5'- --cGCCUGCCCUccGCCAuCAGgcGUUCCc -3'
miRNA:   3'- cccCGGACGGGGuuUGGU-GUU--UAAGG- -5'
33288 3' -52.8 NC_007605.1 + 45127 0.69 0.917967
Target:  5'- aGGGCCUgGCUgCAGAugugcaccCCGCAAGacUUCCa -3'
miRNA:   3'- cCCCGGA-CGGgGUUU--------GGUGUUU--AAGG- -5'
33288 3' -52.8 NC_007605.1 + 54566 0.69 0.917967
Target:  5'- aGGGCCgGUCUCGAuauccgugaACCAgcCGGGUUCCg -3'
miRNA:   3'- cCCCGGaCGGGGUU---------UGGU--GUUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 73470 0.69 0.917967
Target:  5'- cGGGGUCgggGUCCCAcguguauggGGCCGgGGGcUCCa -3'
miRNA:   3'- -CCCCGGa--CGGGGU---------UUGGUgUUUaAGG- -5'
33288 3' -52.8 NC_007605.1 + 115245 0.69 0.917967
Target:  5'- -cGGCgCUGCCCCGGAUguugCugGGGUUCUc -3'
miRNA:   3'- ccCCG-GACGGGGUUUG----GugUUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 8599 0.69 0.923622
Target:  5'- -cGGCUUGuCCCCAccCCAUGGAUUUCu -3'
miRNA:   3'- ccCCGGAC-GGGGUuuGGUGUUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 43545 0.69 0.923622
Target:  5'- --aGCCUGCCCCcAAGuuUCGCAGGUUUCc -3'
miRNA:   3'- cccCGGACGGGG-UUU--GGUGUUUAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.