miRNA display CGI


Results 101 - 120 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33288 3' -52.8 NC_007605.1 + 128829 0.68 0.943797
Target:  5'- cGGGGCU--CCCCA-GCCACAGcacCCu -3'
miRNA:   3'- -CCCCGGacGGGGUuUGGUGUUuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 76280 0.68 0.943797
Target:  5'- uGGaGGCCUGUCCaCAcauacGCUACGccUUCCa -3'
miRNA:   3'- -CC-CCGGACGGG-GUu----UGGUGUuuAAGG- -5'
33288 3' -52.8 NC_007605.1 + 88816 0.68 0.943797
Target:  5'- uGGGCCUGUCUCcGAUUGCAGAUg-- -3'
miRNA:   3'- cCCCGGACGGGGuUUGGUGUUUAagg -5'
33288 3' -52.8 NC_007605.1 + 71099 0.68 0.943797
Target:  5'- cGGGGCuCUGCaCCCugguGGCCAUgcuagaAGAgaCCa -3'
miRNA:   3'- -CCCCG-GACG-GGGu---UUGGUG------UUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 82201 0.68 0.943797
Target:  5'- cGGGCCcauacuaGCCCUcaacgGGGCCACGGGUgCCc -3'
miRNA:   3'- cCCCGGa------CGGGG-----UUUGGUGUUUAaGG- -5'
33288 3' -52.8 NC_007605.1 + 159999 0.68 0.943797
Target:  5'- -cGGCCgccccggGCCCgGGACCGCGcccUCCu -3'
miRNA:   3'- ccCCGGa------CGGGgUUUGGUGUuuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 92302 0.68 0.947801
Target:  5'- aGGGCucugauuaagacaCUGCCCCGGGCCuccuacUCCa -3'
miRNA:   3'- cCCCG-------------GACGGGGUUUGGuguuuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 45622 0.68 0.947801
Target:  5'- aGGGGCCUguacaccGCCCUGugcuGCCACcug--CCu -3'
miRNA:   3'- -CCCCGGA-------CGGGGUu---UGGUGuuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 100253 0.68 0.948234
Target:  5'- aGGGGCaCaGCaCCAAgcuccGCCACGuAUUCCc -3'
miRNA:   3'- -CCCCG-GaCGgGGUU-----UGGUGUuUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 82818 0.68 0.948234
Target:  5'- cGGGGCCUGCCauggauugaCAAAUCAaGAA--CCu -3'
miRNA:   3'- -CCCCGGACGGg--------GUUUGGUgUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 136837 0.68 0.951611
Target:  5'- gGGGGCCaaagagGCCCggCAAGCCAaaguaggCCg -3'
miRNA:   3'- -CCCCGGa-----CGGG--GUUUGGUguuuaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 62543 0.68 0.952432
Target:  5'- aGGGCC-GCCuCCAGAUgGCcGAggCCg -3'
miRNA:   3'- cCCCGGaCGG-GGUUUGgUGuUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 35166 0.68 0.952432
Target:  5'- uGGGCCUgGCUCC---CCAUAGAcUCCc -3'
miRNA:   3'- cCCCGGA-CGGGGuuuGGUGUUUaAGG- -5'
33288 3' -52.8 NC_007605.1 + 56500 0.68 0.952432
Target:  5'- cGGGCC-GCCuCCAggUCAaauuUUCCa -3'
miRNA:   3'- cCCCGGaCGG-GGUuuGGUguuuAAGG- -5'
33288 3' -52.8 NC_007605.1 + 32097 0.68 0.952432
Target:  5'- uGGGCCUgGCUCC---CCAUAGAcUCCc -3'
miRNA:   3'- cCCCGGA-CGGGGuuuGGUGUUUaAGG- -5'
33288 3' -52.8 NC_007605.1 + 29028 0.68 0.952432
Target:  5'- uGGGCCUgGCUCC---CCAUAGAcUCCc -3'
miRNA:   3'- cCCCGGA-CGGGGuuuGGUGUUUaAGG- -5'
33288 3' -52.8 NC_007605.1 + 25959 0.68 0.952432
Target:  5'- uGGGCCUgGCUCC---CCAUAGAcUCCc -3'
miRNA:   3'- cCCCGGA-CGGGGuuuGGUGUUUaAGG- -5'
33288 3' -52.8 NC_007605.1 + 19822 0.68 0.952432
Target:  5'- uGGGCCUgGCUCC---CCAUAGAcUCCc -3'
miRNA:   3'- cCCCGGA-CGGGGuuuGGUGUUUaAGG- -5'
33288 3' -52.8 NC_007605.1 + 16753 0.68 0.952432
Target:  5'- uGGGCCUgGCUCC---CCAUAGAcUCCc -3'
miRNA:   3'- cCCCGGA-CGGGGuuuGGUGUUUaAGG- -5'
33288 3' -52.8 NC_007605.1 + 13684 0.68 0.952432
Target:  5'- uGGGCCUgGCUCC---CCAUAGAcUCCc -3'
miRNA:   3'- cCCCGGA-CGGGGuuuGGUGUUUaAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.