miRNA display CGI


Results 121 - 140 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33288 3' -52.8 NC_007605.1 + 22891 0.68 0.952432
Target:  5'- uGGGCCUgGCUCC---CCAUAGAcUCCc -3'
miRNA:   3'- cCCCGGA-CGGGGuuuGGUGUUUaAGG- -5'
33288 3' -52.8 NC_007605.1 + 13210 0.68 0.952432
Target:  5'- uGGGGCC-GCCCgGGcuGCCGgGGucccUCCg -3'
miRNA:   3'- -CCCCGGaCGGGgUU--UGGUgUUua--AGG- -5'
33288 3' -52.8 NC_007605.1 + 16279 0.68 0.952432
Target:  5'- uGGGGCC-GCCCgGGcuGCCGgGGucccUCCg -3'
miRNA:   3'- -CCCCGGaCGGGgUU--UGGUgUUua--AGG- -5'
33288 3' -52.8 NC_007605.1 + 31624 0.68 0.952432
Target:  5'- uGGGGCC-GCCCgGGcuGCCGgGGucccUCCg -3'
miRNA:   3'- -CCCCGGaCGGGgUU--UGGUgUUua--AGG- -5'
33288 3' -52.8 NC_007605.1 + 28555 0.68 0.952432
Target:  5'- uGGGGCC-GCCCgGGcuGCCGgGGucccUCCg -3'
miRNA:   3'- -CCCCGGaCGGGgUU--UGGUgUUua--AGG- -5'
33288 3' -52.8 NC_007605.1 + 25486 0.68 0.952432
Target:  5'- uGGGGCC-GCCCgGGcuGCCGgGGucccUCCg -3'
miRNA:   3'- -CCCCGGaCGGGgUU--UGGUgUUua--AGG- -5'
33288 3' -52.8 NC_007605.1 + 22417 0.68 0.952432
Target:  5'- uGGGGCC-GCCCgGGcuGCCGgGGucccUCCg -3'
miRNA:   3'- -CCCCGGaCGGGgUU--UGGUgUUua--AGG- -5'
33288 3' -52.8 NC_007605.1 + 19348 0.68 0.952432
Target:  5'- uGGGGCC-GCCCgGGcuGCCGgGGucccUCCg -3'
miRNA:   3'- -CCCCGGaCGGGgUU--UGGUgUUua--AGG- -5'
33288 3' -52.8 NC_007605.1 + 34693 0.68 0.952432
Target:  5'- uGGGGCC-GCCCgGGcuGCCGgGGucccUCCg -3'
miRNA:   3'- -CCCCGGaCGGGgUU--UGGUgUUua--AGG- -5'
33288 3' -52.8 NC_007605.1 + 133225 0.68 0.952432
Target:  5'- cGGGGCCUGuguCCCUggGCagucggGCGGggUCUa -3'
miRNA:   3'- -CCCCGGAC---GGGGuuUGg-----UGUUuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 68426 0.68 0.952839
Target:  5'- uGGGCCUcaacgGCCCCcacguccugagccuuGGCCACAGgg-CCa -3'
miRNA:   3'- cCCCGGA-----CGGGGu--------------UUGGUGUUuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 39106 0.68 0.95601
Target:  5'- cGGcGGCCgcccggcUGCCCCGGagcGCCAgGAAccCCg -3'
miRNA:   3'- -CC-CCGG-------ACGGGGUU---UGGUgUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 121435 0.68 0.956395
Target:  5'- cGGGCCUcuacaGCCCCu-GCCggGCAuuUUUCa -3'
miRNA:   3'- cCCCGGA-----CGGGGuuUGG--UGUuuAAGG- -5'
33288 3' -52.8 NC_007605.1 + 160907 0.68 0.956395
Target:  5'- uGGG-CUGCCCCGGGCC-CAcc--CCa -3'
miRNA:   3'- cCCCgGACGGGGUUUGGuGUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 159493 0.68 0.956395
Target:  5'- cGGGCCgggcucucgUGCCCCAGccgGCCGgGGcaccUCCg -3'
miRNA:   3'- cCCCGG---------ACGGGGUU---UGGUgUUua--AGG- -5'
33288 3' -52.8 NC_007605.1 + 62066 0.68 0.956395
Target:  5'- -aGGCCcUGCUcugggaCCAGACUACGGcgUCCc -3'
miRNA:   3'- ccCCGG-ACGG------GGUUUGGUGUUuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 61620 0.67 0.960128
Target:  5'- aGGGCggcggugGCCUCGAGCCACc---UCCa -3'
miRNA:   3'- cCCCGga-----CGGGGUUUGGUGuuuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 47767 0.67 0.960128
Target:  5'- gGGGGCCUuguccGCUgggCCAggUCACAGA--CCa -3'
miRNA:   3'- -CCCCGGA-----CGG---GGUuuGGUGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 153937 0.67 0.960128
Target:  5'- aGGGCCUGCagguuggcggggCUCAGGgccuCCACGAAggCCu -3'
miRNA:   3'- cCCCGGACG------------GGGUUU----GGUGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 99194 0.67 0.960128
Target:  5'- cGGGCCUcaGCaccuCCCAGGCCACcagccCCa -3'
miRNA:   3'- cCCCGGA--CG----GGGUUUGGUGuuuaaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.