miRNA display CGI


Results 61 - 80 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33288 3' -52.8 NC_007605.1 + 25303 0.67 0.972848
Target:  5'- aGGGGCUcuggggUGCCCgAggUCcCuGGUUCCu -3'
miRNA:   3'- -CCCCGG------ACGGGgUuuGGuGuUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 141818 0.67 0.972848
Target:  5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3'
miRNA:   3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 142225 0.67 0.972848
Target:  5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3'
miRNA:   3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 142735 0.67 0.972848
Target:  5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3'
miRNA:   3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 143040 0.67 0.972848
Target:  5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3'
miRNA:   3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 142938 0.67 0.972848
Target:  5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3'
miRNA:   3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 40542 0.67 0.972848
Target:  5'- cGGGGucCCUGCCUgGcACCAgGG--UCCg -3'
miRNA:   3'- -CCCC--GGACGGGgUuUGGUgUUuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 142123 0.67 0.972848
Target:  5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3'
miRNA:   3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 141614 0.67 0.972848
Target:  5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3'
miRNA:   3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 100371 0.67 0.972848
Target:  5'- cGGGCUgcucaUGCCCguGGgccuCCACGAAgcugUCCg -3'
miRNA:   3'- cCCCGG-----ACGGGguUU----GGUGUUUa---AGG- -5'
33288 3' -52.8 NC_007605.1 + 56741 0.67 0.972848
Target:  5'- uGGGGaCCUGCagauguCCCG-ACCAguccuuuaaGAAUUCCa -3'
miRNA:   3'- -CCCC-GGACG------GGGUuUGGUg--------UUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 26595 0.67 0.972848
Target:  5'- gGGGGaccaCUGCCCCu-GgUAUAAAguggUCCu -3'
miRNA:   3'- -CCCCg---GACGGGGuuUgGUGUUUa---AGG- -5'
33288 3' -52.8 NC_007605.1 + 23526 0.67 0.972848
Target:  5'- gGGGGaccaCUGCCCCu-GgUAUAAAguggUCCu -3'
miRNA:   3'- -CCCCg---GACGGGGuuUgGUGUUUa---AGG- -5'
33288 3' -52.8 NC_007605.1 + 20457 0.67 0.972848
Target:  5'- gGGGGaccaCUGCCCCu-GgUAUAAAguggUCCu -3'
miRNA:   3'- -CCCCg---GACGGGGuuUgGUGUUUa---AGG- -5'
33288 3' -52.8 NC_007605.1 + 17388 0.67 0.972848
Target:  5'- gGGGGaccaCUGCCCCu-GgUAUAAAguggUCCu -3'
miRNA:   3'- -CCCCg---GACGGGGuuUgGUGUUUa---AGG- -5'
33288 3' -52.8 NC_007605.1 + 14319 0.67 0.972848
Target:  5'- gGGGGaccaCUGCCCCu-GgUAUAAAguggUCCu -3'
miRNA:   3'- -CCCCg---GACGGGGuuUgGUGUUUa---AGG- -5'
33288 3' -52.8 NC_007605.1 + 28372 0.67 0.972848
Target:  5'- aGGGGCUcuggggUGCCCgAggUCcCuGGUUCCu -3'
miRNA:   3'- -CCCCGG------ACGGGgUuuGGuGuUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 141104 0.67 0.972848
Target:  5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3'
miRNA:   3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 35103 0.67 0.972848
Target:  5'- gGGGGgCUGacaCCGGGCCGCcggggUCCc -3'
miRNA:   3'- -CCCCgGACgg-GGUUUGGUGuuua-AGG- -5'
33288 3' -52.8 NC_007605.1 + 33857 0.67 0.972848
Target:  5'- aGGuGGCCUGgCCCGGGgUGCGugg-CCa -3'
miRNA:   3'- -CC-CCGGACgGGGUUUgGUGUuuaaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.