Results 81 - 100 of 286 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
33288 | 3' | -52.8 | NC_007605.1 | + | 26595 | 0.67 | 0.972848 |
Target: 5'- gGGGGaccaCUGCCCCu-GgUAUAAAguggUCCu -3' miRNA: 3'- -CCCCg---GACGGGGuuUgGUGUUUa---AGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 23526 | 0.67 | 0.972848 |
Target: 5'- gGGGGaccaCUGCCCCu-GgUAUAAAguggUCCu -3' miRNA: 3'- -CCCCg---GACGGGGuuUgGUGUUUa---AGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 20457 | 0.67 | 0.972848 |
Target: 5'- gGGGGaccaCUGCCCCu-GgUAUAAAguggUCCu -3' miRNA: 3'- -CCCCg---GACGGGGuuUgGUGUUUa---AGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 17388 | 0.67 | 0.972848 |
Target: 5'- gGGGGaccaCUGCCCCu-GgUAUAAAguggUCCu -3' miRNA: 3'- -CCCCg---GACGGGGuuUgGUGUUUa---AGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 142837 | 0.67 | 0.972848 |
Target: 5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3' miRNA: 3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 35103 | 0.67 | 0.972848 |
Target: 5'- gGGGGgCUGacaCCGGGCCGCcggggUCCc -3' miRNA: 3'- -CCCCgGACgg-GGUUUGGUGuuua-AGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 142633 | 0.67 | 0.972848 |
Target: 5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3' miRNA: 3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 18512 | 0.67 | 0.972848 |
Target: 5'- aGGuGGCCUGgCCCGGGgUGCGugg-CCa -3' miRNA: 3'- -CC-CCGGACgGGGUUUgGUGUuuaaGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 40168 | 0.67 | 0.972848 |
Target: 5'- gGGGGCgUcccgggaccccaGCCCCcAGCCgGCAA--UCCa -3' miRNA: 3'- -CCCCGgA------------CGGGGuUUGG-UGUUuaAGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 142735 | 0.67 | 0.972848 |
Target: 5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3' miRNA: 3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 16097 | 0.67 | 0.972848 |
Target: 5'- aGGGGCUcuggggUGCCCgAggUCcCuGGUUCCu -3' miRNA: 3'- -CCCCGG------ACGGGgUuuGGuGuUUAAGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 141104 | 0.67 | 0.972848 |
Target: 5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3' miRNA: 3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 142938 | 0.67 | 0.972848 |
Target: 5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3' miRNA: 3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 143357 | 0.67 | 0.972848 |
Target: 5'- cGGGGucCCUGCCUgGcACCAgGG--UCCg -3' miRNA: 3'- -CCCC--GGACGGGgUuUGGUgUUuaAGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 143142 | 0.67 | 0.972848 |
Target: 5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3' miRNA: 3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 142123 | 0.67 | 0.972848 |
Target: 5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3' miRNA: 3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 137643 | 0.67 | 0.972848 |
Target: 5'- uGGGcCCUGCUCCuAAUCACuuGUgcugugguggcUCCg -3' miRNA: 3'- cCCC-GGACGGGGuUUGGUGuuUA-----------AGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 141002 | 0.67 | 0.972848 |
Target: 5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3' miRNA: 3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 142327 | 0.67 | 0.972848 |
Target: 5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3' miRNA: 3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 142225 | 0.67 | 0.972848 |
Target: 5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3' miRNA: 3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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