miRNA display CGI


Results 101 - 120 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33288 3' -52.8 NC_007605.1 + 142021 0.67 0.972848
Target:  5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3'
miRNA:   3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 141919 0.67 0.972848
Target:  5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3'
miRNA:   3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 143244 0.67 0.972848
Target:  5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3'
miRNA:   3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 98336 0.67 0.972571
Target:  5'- cGGaGCCUGCcggaguuuucuccCCCAGAUCACGGcugUCUa -3'
miRNA:   3'- cCC-CGGACG-------------GGGUUUGGUGUUua-AGG- -5'
33288 3' -52.8 NC_007605.1 + 40010 0.67 0.972293
Target:  5'- cGGGGCUgggGUCCaggGGACCACGcccccacccugcAUUCCa -3'
miRNA:   3'- -CCCCGGa--CGGGg--UUUGGUGUu-----------UAAGG- -5'
33288 3' -52.8 NC_007605.1 + 67957 0.67 0.970868
Target:  5'- cGGGGCCUccucuggGCUCUGgugauucugccacucGGCCACAGcgUCa -3'
miRNA:   3'- -CCCCGGA-------CGGGGU---------------UUGGUGUUuaAGg -5'
33288 3' -52.8 NC_007605.1 + 53635 0.67 0.969988
Target:  5'- uGGGCCaUGCCCUcGACUucCAGGagCCg -3'
miRNA:   3'- cCCCGG-ACGGGGuUUGGu-GUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 34823 0.67 0.969988
Target:  5'- aGGGCCcaaagagGCCCCucuCCGCGAGg--- -3'
miRNA:   3'- cCCCGGa------CGGGGuuuGGUGUUUaagg -5'
33288 3' -52.8 NC_007605.1 + 16409 0.67 0.969988
Target:  5'- aGGGCCcaaagagGCCCCucuCCGCGAGg--- -3'
miRNA:   3'- cCCCGGa------CGGGGuuuGGUGUUUaagg -5'
33288 3' -52.8 NC_007605.1 + 28685 0.67 0.969988
Target:  5'- aGGGCCcaaagagGCCCCucuCCGCGAGg--- -3'
miRNA:   3'- cCCCGGa------CGGGGuuuGGUGUUUaagg -5'
33288 3' -52.8 NC_007605.1 + 31754 0.67 0.969988
Target:  5'- aGGGCCcaaagagGCCCCucuCCGCGAGg--- -3'
miRNA:   3'- cCCCGGa------CGGGGuuuGGUGUUUaagg -5'
33288 3' -52.8 NC_007605.1 + 22547 0.67 0.969988
Target:  5'- aGGGCCcaaagagGCCCCucuCCGCGAGg--- -3'
miRNA:   3'- cCCCGGa------CGGGGuuuGGUGUUUaagg -5'
33288 3' -52.8 NC_007605.1 + 36621 0.67 0.969988
Target:  5'- cGGGGCCuuauuuUGCCaCAAGgcCCACAAAcagCCc -3'
miRNA:   3'- -CCCCGG------ACGGgGUUU--GGUGUUUaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 54836 0.67 0.969988
Target:  5'- uGGGCgUGCCCCcagcGCCuuccuAAUUCUg -3'
miRNA:   3'- cCCCGgACGGGGuu--UGGugu--UUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 110622 0.67 0.969988
Target:  5'- uGGGGCUaaUGUCCgAAuggaagagGCCGCAGug-CCg -3'
miRNA:   3'- -CCCCGG--ACGGGgUU--------UGGUGUUuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 81557 0.67 0.969988
Target:  5'- uGGGGCCUGUgcuaCCGGAC-ACGGGgccaugCCg -3'
miRNA:   3'- -CCCCGGACGg---GGUUUGgUGUUUaa----GG- -5'
33288 3' -52.8 NC_007605.1 + 170331 0.67 0.969988
Target:  5'- aGGcGGUCgcGCCCCcGGCCGCGccagCCa -3'
miRNA:   3'- -CC-CCGGa-CGGGGuUUGGUGUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 170853 0.67 0.969988
Target:  5'- aGGcGGUCgcGCCCCcGGCCGCGccagCCa -3'
miRNA:   3'- -CC-CCGGa-CGGGGuUUGGUGUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 171391 0.67 0.969988
Target:  5'- aGGcGGUCgcGCCCCcGGCCGCGccagCCa -3'
miRNA:   3'- -CC-CCGGa-CGGGGuUUGGUGUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 13340 0.67 0.969988
Target:  5'- aGGGCCcaaagagGCCCCucuCCGCGAGg--- -3'
miRNA:   3'- cCCCGGa------CGGGGuuuGGUGUUUaagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.