miRNA display CGI


Results 61 - 80 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33288 3' -52.8 NC_007605.1 + 27719 0.67 0.972848
Target:  5'- aGGuGGCCUGgCCCGGGgUGCGugg-CCa -3'
miRNA:   3'- -CC-CCGGACgGGGUUUgGUGUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 27840 0.66 0.984262
Target:  5'- aGGGGCCUgGCUCC--GCCGgGugg-CCc -3'
miRNA:   3'- -CCCCGGA-CGGGGuuUGGUgUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 28286 0.73 0.739643
Target:  5'- cGGGGCCcagGCCCCAGAgUcCAGAggUCa -3'
miRNA:   3'- -CCCCGGa--CGGGGUUUgGuGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 28372 0.67 0.972848
Target:  5'- aGGGGCUcuggggUGCCCgAggUCcCuGGUUCCu -3'
miRNA:   3'- -CCCCGG------ACGGGgUuuGGuGuUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 28373 0.69 0.923622
Target:  5'- cGGGCg-GCCCCAGagGCCG---GUUCCu -3'
miRNA:   3'- cCCCGgaCGGGGUU--UGGUguuUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 28472 0.7 0.886068
Target:  5'- uGGGGCCUggGCCCCGAGgguggcuccCCuCAGAcaUUCUu -3'
miRNA:   3'- -CCCCGGA--CGGGGUUU---------GGuGUUU--AAGG- -5'
33288 3' -52.8 NC_007605.1 + 28555 0.68 0.952432
Target:  5'- uGGGGCC-GCCCgGGcuGCCGgGGucccUCCg -3'
miRNA:   3'- -CCCCGGaCGGGgUU--UGGUgUUua--AGG- -5'
33288 3' -52.8 NC_007605.1 + 28685 0.67 0.969988
Target:  5'- aGGGCCcaaagagGCCCCucuCCGCGAGg--- -3'
miRNA:   3'- cCCCGGa------CGGGGuuuGGUGUUUaagg -5'
33288 3' -52.8 NC_007605.1 + 29028 0.68 0.952432
Target:  5'- uGGGCCUgGCUCC---CCAUAGAcUCCc -3'
miRNA:   3'- cCCCGGA-CGGGGuuuGGUGUUUaAGG- -5'
33288 3' -52.8 NC_007605.1 + 29664 0.67 0.972848
Target:  5'- gGGGGaccaCUGCCCCu-GgUAUAAAguggUCCu -3'
miRNA:   3'- -CCCCg---GACGGGGuuUgGUGUUUa---AGG- -5'
33288 3' -52.8 NC_007605.1 + 30788 0.67 0.972848
Target:  5'- aGGuGGCCUGgCCCGGGgUGCGugg-CCa -3'
miRNA:   3'- -CC-CCGGACgGGGUUUgGUGUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 30909 0.66 0.984262
Target:  5'- aGGGGCCUgGCUCC--GCCGgGugg-CCc -3'
miRNA:   3'- -CCCCGGA-CGGGGuuUGGUgUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 31355 0.73 0.739643
Target:  5'- cGGGGCCcagGCCCCAGAgUcCAGAggUCa -3'
miRNA:   3'- -CCCCGGa--CGGGGUUUgGuGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 31441 0.67 0.972848
Target:  5'- aGGGGCUcuggggUGCCCgAggUCcCuGGUUCCu -3'
miRNA:   3'- -CCCCGG------ACGGGgUuuGGuGuUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 31442 0.69 0.923622
Target:  5'- cGGGCg-GCCCCAGagGCCG---GUUCCu -3'
miRNA:   3'- cCCCGgaCGGGGUU--UGGUguuUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 31541 0.7 0.886068
Target:  5'- uGGGGCCUggGCCCCGAGgguggcuccCCuCAGAcaUUCUu -3'
miRNA:   3'- -CCCCGGA--CGGGGUUU---------GGuGUUU--AAGG- -5'
33288 3' -52.8 NC_007605.1 + 31624 0.68 0.952432
Target:  5'- uGGGGCC-GCCCgGGcuGCCGgGGucccUCCg -3'
miRNA:   3'- -CCCCGGaCGGGgUU--UGGUgUUua--AGG- -5'
33288 3' -52.8 NC_007605.1 + 31754 0.67 0.969988
Target:  5'- aGGGCCcaaagagGCCCCucuCCGCGAGg--- -3'
miRNA:   3'- cCCCGGa------CGGGGuuuGGUGUUUaagg -5'
33288 3' -52.8 NC_007605.1 + 32097 0.68 0.952432
Target:  5'- uGGGCCUgGCUCC---CCAUAGAcUCCc -3'
miRNA:   3'- cCCCGGA-CGGGGuuuGGUGUUUaAGG- -5'
33288 3' -52.8 NC_007605.1 + 32733 0.67 0.972848
Target:  5'- gGGGGaccaCUGCCCCu-GgUAUAAAguggUCCu -3'
miRNA:   3'- -CCCCg---GACGGGGuuUgGUGUUUa---AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.