miRNA display CGI


Results 81 - 100 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33288 3' -52.8 NC_007605.1 + 33857 0.67 0.972848
Target:  5'- aGGuGGCCUGgCCCGGGgUGCGugg-CCa -3'
miRNA:   3'- -CC-CCGGACgGGGUUUgGUGUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 33977 0.66 0.984262
Target:  5'- aGGGGCCUgGCUCC--GCCGgGugg-CCc -3'
miRNA:   3'- -CCCCGGA-CGGGGuuUGGUgUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 34424 0.73 0.739643
Target:  5'- cGGGGCCcagGCCCCAGAgUcCAGAggUCa -3'
miRNA:   3'- -CCCCGGa--CGGGGUUUgGuGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 34510 0.67 0.972848
Target:  5'- aGGGGCUcuggggUGCCCgAggUCcCuGGUUCCu -3'
miRNA:   3'- -CCCCGG------ACGGGgUuuGGuGuUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 34511 0.69 0.923622
Target:  5'- cGGGCg-GCCCCAGagGCCG---GUUCCu -3'
miRNA:   3'- cCCCGgaCGGGGUU--UGGUguuUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 34610 0.7 0.886068
Target:  5'- uGGGGCCUggGCCCCGAGgguggcuccCCuCAGAcaUUCUu -3'
miRNA:   3'- -CCCCGGA--CGGGGUUU---------GGuGUUU--AAGG- -5'
33288 3' -52.8 NC_007605.1 + 34693 0.68 0.952432
Target:  5'- uGGGGCC-GCCCgGGcuGCCGgGGucccUCCg -3'
miRNA:   3'- -CCCCGGaCGGGgUU--UGGUgUUua--AGG- -5'
33288 3' -52.8 NC_007605.1 + 34823 0.67 0.969988
Target:  5'- aGGGCCcaaagagGCCCCucuCCGCGAGg--- -3'
miRNA:   3'- cCCCGGa------CGGGGuuuGGUGUUUaagg -5'
33288 3' -52.8 NC_007605.1 + 35103 0.67 0.972848
Target:  5'- gGGGGgCUGacaCCGGGCCGCcggggUCCc -3'
miRNA:   3'- -CCCCgGACgg-GGUUUGGUGuuua-AGG- -5'
33288 3' -52.8 NC_007605.1 + 35166 0.68 0.952432
Target:  5'- uGGGCCUgGCUCC---CCAUAGAcUCCc -3'
miRNA:   3'- cCCCGGA-CGGGGuuuGGUGUUUaAGG- -5'
33288 3' -52.8 NC_007605.1 + 36293 0.67 0.960128
Target:  5'- ---aCCUGCCCa--ACCACAGGUUCa -3'
miRNA:   3'- ccccGGACGGGguuUGGUGUUUAAGg -5'
33288 3' -52.8 NC_007605.1 + 36621 0.67 0.969988
Target:  5'- cGGGGCCuuauuuUGCCaCAAGgcCCACAAAcagCCc -3'
miRNA:   3'- -CCCCGG------ACGGgGUUU--GGUGUUUaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 39106 0.68 0.95601
Target:  5'- cGGcGGCCgcccggcUGCCCCGGagcGCCAgGAAccCCg -3'
miRNA:   3'- -CC-CCGG-------ACGGGGUU---UGGUgUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 40010 0.67 0.972293
Target:  5'- cGGGGCUgggGUCCaggGGACCACGcccccacccugcAUUCCa -3'
miRNA:   3'- -CCCCGGa--CGGGg--UUUGGUGUu-----------UAAGG- -5'
33288 3' -52.8 NC_007605.1 + 40026 0.72 0.796777
Target:  5'- aGGGCgUGCCCCGcuuGCCugG---UCCu -3'
miRNA:   3'- cCCCGgACGGGGUu--UGGugUuuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 40168 0.67 0.972848
Target:  5'- gGGGGCgUcccgggaccccaGCCCCcAGCCgGCAA--UCCa -3'
miRNA:   3'- -CCCCGgA------------CGGGGuUUGG-UGUUuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 40542 0.67 0.972848
Target:  5'- cGGGGucCCUGCCUgGcACCAgGG--UCCg -3'
miRNA:   3'- -CCCC--GGACGGGgUuUGGUgUUuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 43545 0.69 0.923622
Target:  5'- --aGCCUGCCCCcAAGuuUCGCAGGUUUCc -3'
miRNA:   3'- cccCGGACGGGG-UUU--GGUGUUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 45127 0.69 0.917967
Target:  5'- aGGGCCUgGCUgCAGAugugcaccCCGCAAGacUUCCa -3'
miRNA:   3'- cCCCGGA-CGGgGUUU--------GGUGUUU--AAGG- -5'
33288 3' -52.8 NC_007605.1 + 45276 0.66 0.986022
Target:  5'- uGGuGGCCUgGCCCCccga-GCAGG-UCCg -3'
miRNA:   3'- -CC-CCGGA-CGGGGuuuggUGUUUaAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.