miRNA display CGI


Results 101 - 120 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33288 3' -52.8 NC_007605.1 + 45462 0.68 0.939119
Target:  5'- gGGGGCCagGCCaCCAuGCUAUcgGUUUa -3'
miRNA:   3'- -CCCCGGa-CGG-GGUuUGGUGuuUAAGg -5'
33288 3' -52.8 NC_007605.1 + 45622 0.68 0.947801
Target:  5'- aGGGGCCUguacaccGCCCUGugcuGCCACcug--CCu -3'
miRNA:   3'- -CCCCGGA-------CGGGGUu---UGGUGuuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 47515 0.66 0.986022
Target:  5'- cGGcGCC-GCCUCGgauuccGACCACGAGUcuuugucccUCCa -3'
miRNA:   3'- cCC-CGGaCGGGGU------UUGGUGUUUA---------AGG- -5'
33288 3' -52.8 NC_007605.1 + 47767 0.67 0.960128
Target:  5'- gGGGGCCUuguccGCUgggCCAggUCACAGA--CCa -3'
miRNA:   3'- -CCCCGGA-----CGG---GGUuuGGUGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 47794 0.7 0.905925
Target:  5'- -aGGCCaGCCCCAGAUC-CAGGagCCu -3'
miRNA:   3'- ccCCGGaCGGGGUUUGGuGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 47849 1.14 0.003428
Target:  5'- gGGGGCCUGCCCCAAACCACAAAUUCCc -3'
miRNA:   3'- -CCCCGGACGGGGUUUGGUGUUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 48464 0.71 0.831947
Target:  5'- gGGGGCCgggggGCCCUgccuGAGCCGgGAuguUUUCg -3'
miRNA:   3'- -CCCCGGa----CGGGG----UUUGGUgUUu--AAGG- -5'
33288 3' -52.8 NC_007605.1 + 48651 0.68 0.939119
Target:  5'- aGGGCC--CCCCGGcccCCACGAGcUCCu -3'
miRNA:   3'- cCCCGGacGGGGUUu--GGUGUUUaAGG- -5'
33288 3' -52.8 NC_007605.1 + 48847 0.7 0.905925
Target:  5'- cGGGCUggcgGCCCCGAAUCcggGCAGugcugCCg -3'
miRNA:   3'- cCCCGGa---CGGGGUUUGG---UGUUuaa--GG- -5'
33288 3' -52.8 NC_007605.1 + 50358 0.66 0.982339
Target:  5'- cGGGGCCgcggugggcUGCCCCcGAggACGGGcgCCg -3'
miRNA:   3'- -CCCCGG---------ACGGGGuUUggUGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 50988 0.7 0.892922
Target:  5'- uGGGCUccaGCCCCAGGacaCACAAGccUCCu -3'
miRNA:   3'- cCCCGGa--CGGGGUUUg--GUGUUUa-AGG- -5'
33288 3' -52.8 NC_007605.1 + 51256 0.72 0.80582
Target:  5'- uGGGCCUGCCagGGGCCACc--UUCUc -3'
miRNA:   3'- cCCCGGACGGggUUUGGUGuuuAAGG- -5'
33288 3' -52.8 NC_007605.1 + 51947 0.66 0.986022
Target:  5'- aGGGGCCgaccgaggaagGCCgCC--GCCACGGccgCCu -3'
miRNA:   3'- -CCCCGGa----------CGG-GGuuUGGUGUUuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 52653 0.68 0.939119
Target:  5'- gGGGGCaUGCCCUcAACCAC-----CCg -3'
miRNA:   3'- -CCCCGgACGGGGuUUGGUGuuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 53193 0.67 0.960128
Target:  5'- cGGGGCUccauUGCCCCAu-CCAguuGGUggugCCg -3'
miRNA:   3'- -CCCCGG----ACGGGGUuuGGUgu-UUAa---GG- -5'
33288 3' -52.8 NC_007605.1 + 53381 0.66 0.980024
Target:  5'- uGGGGCaauggaGCCCCGAcccggcgGgCACAAuUUCUg -3'
miRNA:   3'- -CCCCGga----CGGGGUU-------UgGUGUUuAAGG- -5'
33288 3' -52.8 NC_007605.1 + 53430 0.66 0.977969
Target:  5'- cGGGUCggugugGCCCCuGGCCugGGugaCCa -3'
miRNA:   3'- cCCCGGa-----CGGGGuUUGGugUUuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 53635 0.67 0.969988
Target:  5'- uGGGCCaUGCCCUcGACUucCAGGagCCg -3'
miRNA:   3'- cCCCGG-ACGGGGuUUGGu-GUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 54012 0.66 0.977969
Target:  5'- aGGGUCUGgcucUCCCGGACCuGCuc-UUCCa -3'
miRNA:   3'- cCCCGGAC----GGGGUUUGG-UGuuuAAGG- -5'
33288 3' -52.8 NC_007605.1 + 54566 0.69 0.917967
Target:  5'- aGGGCCgGUCUCGAuauccgugaACCAgcCGGGUUCCg -3'
miRNA:   3'- cCCCGGaCGGGGUU---------UGGU--GUUUAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.