miRNA display CGI


Results 121 - 140 of 286 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33288 3' -52.8 NC_007605.1 + 54836 0.67 0.969988
Target:  5'- uGGGCgUGCCCCcagcGCCuuccuAAUUCUg -3'
miRNA:   3'- cCCCGgACGGGGuu--UGGugu--UUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 55006 0.66 0.982339
Target:  5'- gGGGGCagUGUCCagaaAGGCCuCGAgcuGUUCCu -3'
miRNA:   3'- -CCCCGg-ACGGGg---UUUGGuGUU---UAAGG- -5'
33288 3' -52.8 NC_007605.1 + 55762 0.67 0.969691
Target:  5'- uGGGGCCgagGCCacaccggCCAGGCC-CAAcAUUgCCu -3'
miRNA:   3'- -CCCCGGa--CGG-------GGUUUGGuGUU-UAA-GG- -5'
33288 3' -52.8 NC_007605.1 + 56500 0.68 0.952432
Target:  5'- cGGGCC-GCCuCCAggUCAaauuUUCCa -3'
miRNA:   3'- cCCCGGaCGG-GGUuuGGUguuuAAGG- -5'
33288 3' -52.8 NC_007605.1 + 56741 0.67 0.972848
Target:  5'- uGGGGaCCUGCagauguCCCG-ACCAguccuuuaaGAAUUCCa -3'
miRNA:   3'- -CCCC-GGACG------GGGUuUGGUg--------UUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 56797 0.74 0.689301
Target:  5'- uGGaGGCCUGCCugCCGucccuGGCCACGAAggacgcggUCCg -3'
miRNA:   3'- -CC-CCGGACGG--GGU-----UUGGUGUUUa-------AGG- -5'
33288 3' -52.8 NC_007605.1 + 58057 0.75 0.648093
Target:  5'- cGGGGCCgcggaGgCCgGGGCCGCGGAggCCg -3'
miRNA:   3'- -CCCCGGa----CgGGgUUUGGUGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 58087 0.67 0.963634
Target:  5'- cGGGGCCgcggaGgCCgGGGCCGCGGAg--- -3'
miRNA:   3'- -CCCCGGa----CgGGgUUUGGUGUUUaagg -5'
33288 3' -52.8 NC_007605.1 + 58117 0.77 0.565558
Target:  5'- cGGGGCCgcggaGgCCgGGGCCGCAGAggCCg -3'
miRNA:   3'- -CCCCGGa----CgGGgUUUGGUGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 58147 0.77 0.565558
Target:  5'- cGGGGCCgcagaGgCCgGGGCCGCAGAggCCg -3'
miRNA:   3'- -CCCCGGa----CgGGgUUUGGUGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 58567 0.7 0.899542
Target:  5'- gGGGGU--GCCCgGGGCCGCA---UCCu -3'
miRNA:   3'- -CCCCGgaCGGGgUUUGGUGUuuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 60760 0.67 0.975506
Target:  5'- uGGGCCUGgCCacccGCCGCu--UUCUg -3'
miRNA:   3'- cCCCGGACgGGguu-UGGUGuuuAAGG- -5'
33288 3' -52.8 NC_007605.1 + 60940 0.66 0.977969
Target:  5'- gGGGGCUgucGUCCCAcgaCGCAG--UCCu -3'
miRNA:   3'- -CCCCGGa--CGGGGUuugGUGUUuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 61067 0.69 0.929032
Target:  5'- cGGGGCCc-CUCCGAuGCCugGGAgUCCc -3'
miRNA:   3'- -CCCCGGacGGGGUU-UGGugUUUaAGG- -5'
33288 3' -52.8 NC_007605.1 + 61181 0.7 0.878983
Target:  5'- cGGGGCC-GCCgCC--ACCGCugccgUCCa -3'
miRNA:   3'- -CCCCGGaCGG-GGuuUGGUGuuua-AGG- -5'
33288 3' -52.8 NC_007605.1 + 61271 0.72 0.809393
Target:  5'- cGGGGCCUGCCacaggcggcuguagCGGACCcauaGCAGAgaCCu -3'
miRNA:   3'- -CCCCGGACGGg-------------GUUUGG----UGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 61620 0.67 0.960128
Target:  5'- aGGGCggcggugGCCUCGAGCCACc---UCCa -3'
miRNA:   3'- cCCCGga-----CGGGGUUUGGUGuuuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 61809 0.67 0.975506
Target:  5'- aGGGCCuccaucucUGCCgCCAucccGGCCAgGAAggCCu -3'
miRNA:   3'- cCCCGG--------ACGG-GGU----UUGGUgUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 62066 0.68 0.956395
Target:  5'- -aGGCCcUGCUcugggaCCAGACUACGGcgUCCc -3'
miRNA:   3'- ccCCGG-ACGG------GGUUUGGUGUUuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 62278 0.66 0.977969
Target:  5'- uGGuGGUCUcuuucaccGCCCCGAGUCACu--UUCCa -3'
miRNA:   3'- -CC-CCGGA--------CGGGGUUUGGUGuuuAAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.