miRNA display CGI


Results 21 - 40 of 286 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33288 3' -52.8 NC_007605.1 + 160907 0.68 0.956395
Target:  5'- uGGG-CUGCCCCGGGCC-CAcc--CCa -3'
miRNA:   3'- cCCCgGACGGGGUUUGGuGUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 160198 0.66 0.980243
Target:  5'- aGGGCgCgGUCCCGGGCC-CGGGgcggCCg -3'
miRNA:   3'- cCCCG-GaCGGGGUUUGGuGUUUaa--GG- -5'
33288 3' -52.8 NC_007605.1 + 159999 0.68 0.943797
Target:  5'- -cGGCCgccccggGCCCgGGACCGCGcccUCCu -3'
miRNA:   3'- ccCCGGa------CGGGgUUUGGUGUuuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 159868 0.69 0.931128
Target:  5'- ---cCCUGCCCCGuugcaccgauagcauGGCCGCcaGAGUUCCa -3'
miRNA:   3'- ccccGGACGGGGU---------------UUGGUG--UUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 159493 0.68 0.956395
Target:  5'- cGGGCCgggcucucgUGCCCCAGccgGCCGgGGcaccUCCg -3'
miRNA:   3'- cCCCGG---------ACGGGGUU---UGGUgUUua--AGG- -5'
33288 3' -52.8 NC_007605.1 + 159326 0.72 0.814702
Target:  5'- cGGGCCaGCuCCCAguaGACCACG---UCCc -3'
miRNA:   3'- cCCCGGaCG-GGGU---UUGGUGUuuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 158828 0.7 0.892922
Target:  5'- aGGGCCUGgCCgGggcuGACCGCG---UCCg -3'
miRNA:   3'- cCCCGGACgGGgU----UUGGUGUuuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 158632 0.66 0.982339
Target:  5'- uGGGGUCUGCgcaCCgAGACgGCAcg--CCa -3'
miRNA:   3'- -CCCCGGACG---GGgUUUGgUGUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 158364 0.66 0.981934
Target:  5'- gGGGGCCUGgCCaacggggugcGCCGCuacg-CCa -3'
miRNA:   3'- -CCCCGGACgGGguu-------UGGUGuuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 157439 0.66 0.986022
Target:  5'- gGGGGUgCU-CCCgCGGGCCGCGGAUggggCUg -3'
miRNA:   3'- -CCCCG-GAcGGG-GUUUGGUGUUUAa---GG- -5'
33288 3' -52.8 NC_007605.1 + 155984 0.67 0.960128
Target:  5'- gGGGGCUgagGCCCCcg--CACA---UCCa -3'
miRNA:   3'- -CCCCGGa--CGGGGuuugGUGUuuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 154467 0.67 0.960128
Target:  5'- -cGGCCUGCgCCCGggagaaGACUAUGAG-UCCu -3'
miRNA:   3'- ccCCGGACG-GGGU------UUGGUGUUUaAGG- -5'
33288 3' -52.8 NC_007605.1 + 153937 0.67 0.960128
Target:  5'- aGGGCCUGCagguuggcggggCUCAGGgccuCCACGAAggCCu -3'
miRNA:   3'- cCCCGGACG------------GGGUUU----GGUGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 153512 0.69 0.923622
Target:  5'- aGGaaCUGCCCCAGAuCCACGAccgcaUCCa -3'
miRNA:   3'- cCCcgGACGGGGUUU-GGUGUUua---AGG- -5'
33288 3' -52.8 NC_007605.1 + 153246 0.66 0.980243
Target:  5'- gGGGGCCUGagacuggaCCCu-ACUACu-AUUCUc -3'
miRNA:   3'- -CCCCGGACg-------GGGuuUGGUGuuUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 151109 0.66 0.980024
Target:  5'- --cGCCUGCCCCGucccACCcCAAGgucaugcUUCCu -3'
miRNA:   3'- cccCGGACGGGGUu---UGGuGUUU-------AAGG- -5'
33288 3' -52.8 NC_007605.1 + 151067 0.72 0.814702
Target:  5'- uGGGCUcaggcgGCCCCAGACaCGCAAuuugCCc -3'
miRNA:   3'- cCCCGGa-----CGGGGUUUG-GUGUUuaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 143357 0.67 0.972848
Target:  5'- cGGGGucCCUGCCUgGcACCAgGG--UCCg -3'
miRNA:   3'- -CCCC--GGACGGGgUuUGGUgUUuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 143244 0.67 0.972848
Target:  5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3'
miRNA:   3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 143142 0.67 0.972848
Target:  5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3'
miRNA:   3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.