miRNA display CGI


Results 61 - 80 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33288 3' -52.8 NC_007605.1 + 141002 0.67 0.972848
Target:  5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3'
miRNA:   3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 140667 0.66 0.986682
Target:  5'- uGGGUccgCUGCCCCGcuccggcgggggguGGCCGgcugcagccgggucCGGGUUCCg -3'
miRNA:   3'- cCCCG---GACGGGGU--------------UUGGU--------------GUUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 137643 0.67 0.972848
Target:  5'- uGGGcCCUGCUCCuAAUCACuuGUgcugugguggcUCCg -3'
miRNA:   3'- cCCC-GGACGGGGuUUGGUGuuUA-----------AGG- -5'
33288 3' -52.8 NC_007605.1 + 137243 0.67 0.963293
Target:  5'- gGGGGCCUGUgugCCCGGggguggaggcugcGCCugAGcugCCu -3'
miRNA:   3'- -CCCCGGACG---GGGUU-------------UGGugUUuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 136945 0.72 0.80582
Target:  5'- cGGGGCCUuacggauuucaGCCUCAucaaAGCUACGAAgugCCc -3'
miRNA:   3'- -CCCCGGA-----------CGGGGU----UUGGUGUUUaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 136837 0.68 0.951611
Target:  5'- gGGGGCCaaagagGCCCggCAAGCCAaaguaggCCg -3'
miRNA:   3'- -CCCCGGa-----CGGG--GUUUGGUguuuaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 136649 0.67 0.975506
Target:  5'- cGGGCCUcuuugGCCCCccuCCACccGUgccUCCu -3'
miRNA:   3'- cCCCGGA-----CGGGGuuuGGUGuuUA---AGG- -5'
33288 3' -52.8 NC_007605.1 + 136202 0.71 0.856399
Target:  5'- -aGGCCagcgacGCCCCGGACCuACAAAagCCg -3'
miRNA:   3'- ccCCGGa-----CGGGGUUUGG-UGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 134931 0.68 0.939119
Target:  5'- gGGGGCgaagGCgugCCCGAACC-CGGGUUUCa -3'
miRNA:   3'- -CCCCGga--CG---GGGUUUGGuGUUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 134680 0.72 0.823413
Target:  5'- -uGGCCUccccggugGCCCCAAGCUgaGCcAGUUCCu -3'
miRNA:   3'- ccCCGGA--------CGGGGUUUGG--UGuUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 134601 0.69 0.934198
Target:  5'- aGGGaGCCUGCCCau--CCAuCAAcUUCa -3'
miRNA:   3'- -CCC-CGGACGGGguuuGGU-GUUuAAGg -5'
33288 3' -52.8 NC_007605.1 + 134523 0.67 0.963634
Target:  5'- gGGGGUCUGCCgCCAccgugGGCCuCAcguAGUgggCCc -3'
miRNA:   3'- -CCCCGGACGG-GGU-----UUGGuGU---UUAa--GG- -5'
33288 3' -52.8 NC_007605.1 + 134299 0.67 0.975506
Target:  5'- aGGGCCucgagUGCggCUAAACCuacgcGCAGGUUCCa -3'
miRNA:   3'- cCCCGG-----ACGg-GGUUUGG-----UGUUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 133482 0.67 0.963634
Target:  5'- gGGGGaCCUGaccugcaugcuCUCCAGGCCAuCAGAgaaggCCa -3'
miRNA:   3'- -CCCC-GGAC-----------GGGGUUUGGU-GUUUaa---GG- -5'
33288 3' -52.8 NC_007605.1 + 133225 0.68 0.952432
Target:  5'- cGGGGCCUGuguCCCUggGCagucggGCGGggUCUa -3'
miRNA:   3'- -CCCCGGAC---GGGGuuUGg-----UGUUuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 132451 0.67 0.969691
Target:  5'- cGGGGUCUGUgugCCCucuCCACAcacgaccuggcaaAAUUUCa -3'
miRNA:   3'- -CCCCGGACG---GGGuuuGGUGU-------------UUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 132408 0.71 0.856399
Target:  5'- cGGGCCgGCCuCCuuuCCugGAAaUCCa -3'
miRNA:   3'- cCCCGGaCGG-GGuuuGGugUUUaAGG- -5'
33288 3' -52.8 NC_007605.1 + 129474 0.73 0.749461
Target:  5'- aGGGGCCcaaccuUGCCCUAuACCAacugcugUCCa -3'
miRNA:   3'- -CCCCGG------ACGGGGUuUGGUguuua--AGG- -5'
33288 3' -52.8 NC_007605.1 + 129011 0.66 0.984262
Target:  5'- uGGGGa--GCCCC--GCCA--GAUUCCa -3'
miRNA:   3'- -CCCCggaCGGGGuuUGGUguUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 128829 0.68 0.943797
Target:  5'- cGGGGCU--CCCCA-GCCACAGcacCCu -3'
miRNA:   3'- -CCCCGGacGGGGUuUGGUGUUuaaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.