miRNA display CGI


Results 81 - 100 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33288 3' -52.8 NC_007605.1 + 127428 0.7 0.886068
Target:  5'- -cGGCCcucuuccgUGCCUCGGGCCuCAAcgUCCg -3'
miRNA:   3'- ccCCGG--------ACGGGGUUUGGuGUUuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 127327 0.66 0.986022
Target:  5'- cGGGGCCgUGCaCCU--GCCAuCGGGacagauugucUUCCa -3'
miRNA:   3'- -CCCCGG-ACG-GGGuuUGGU-GUUU----------AAGG- -5'
33288 3' -52.8 NC_007605.1 + 124000 0.67 0.963634
Target:  5'- uGGGCCUGUuuaugCCCAAuCC-CAAGUacacgaccUCCg -3'
miRNA:   3'- cCCCGGACG-----GGGUUuGGuGUUUA--------AGG- -5'
33288 3' -52.8 NC_007605.1 + 122966 0.83 0.267355
Target:  5'- aGGGCCUGCUCUAgGGCUAUAAGUUCCc -3'
miRNA:   3'- cCCCGGACGGGGU-UUGGUGUUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 121435 0.68 0.956395
Target:  5'- cGGGCCUcuacaGCCCCu-GCCggGCAuuUUUCa -3'
miRNA:   3'- cCCCGGA-----CGGGGuuUGG--UGUuuAAGG- -5'
33288 3' -52.8 NC_007605.1 + 121247 0.66 0.986022
Target:  5'- aGGGGCUguagagGCCCgGGACgGCcg--UCUg -3'
miRNA:   3'- -CCCCGGa-----CGGGgUUUGgUGuuuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 119122 0.67 0.972848
Target:  5'- uGGGGUggGCCCCGAGUUugGuaccAUUCCu -3'
miRNA:   3'- -CCCCGgaCGGGGUUUGGugUu---UAAGG- -5'
33288 3' -52.8 NC_007605.1 + 115245 0.69 0.917967
Target:  5'- -cGGCgCUGCCCCGGAUguugCugGGGUUCUc -3'
miRNA:   3'- ccCCG-GACGGGGUUUG----GugUUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 114645 0.75 0.662568
Target:  5'- gGGGGCCUGgagucgaucaccuuaCCCCAGGCCGaggccccUUCCu -3'
miRNA:   3'- -CCCCGGAC---------------GGGGUUUGGUguuu---AAGG- -5'
33288 3' -52.8 NC_007605.1 + 114210 0.66 0.977969
Target:  5'- cGGGCCUGgCCaCGguGGCUA-GGGUUCCa -3'
miRNA:   3'- cCCCGGACgGG-GU--UUGGUgUUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 111967 0.74 0.719727
Target:  5'- aGGGCCccuuuUGCCCCGuGCCGCAGcgUa- -3'
miRNA:   3'- cCCCGG-----ACGGGGUuUGGUGUUuaAgg -5'
33288 3' -52.8 NC_007605.1 + 111233 0.67 0.960128
Target:  5'- aGGGCCUGUCgCAGcucgucucugGCCuCAAGcUCCu -3'
miRNA:   3'- cCCCGGACGGgGUU----------UGGuGUUUaAGG- -5'
33288 3' -52.8 NC_007605.1 + 110622 0.67 0.969988
Target:  5'- uGGGGCUaaUGUCCgAAuggaagagGCCGCAGug-CCg -3'
miRNA:   3'- -CCCCGG--ACGGGgUU--------UGGUGUUuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 110336 0.7 0.878983
Target:  5'- aGGGCCgucugcGCCCCcacgGGGCCACAcg--CCg -3'
miRNA:   3'- cCCCGGa-----CGGGG----UUUGGUGUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 110309 0.69 0.929032
Target:  5'- uGGGCCUGaCCUCGugUgGCGAGagUCCg -3'
miRNA:   3'- cCCCGGAC-GGGGUuuGgUGUUUa-AGG- -5'
33288 3' -52.8 NC_007605.1 + 107974 0.67 0.963634
Target:  5'- aGGGCCUagGCCUCGgcucuGACCuaGCuccAGUUCCa -3'
miRNA:   3'- cCCCGGA--CGGGGU-----UUGG--UGu--UUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 105329 0.69 0.912067
Target:  5'- --cGCCUGCCCUccGCCAuCAGgcGUUCCc -3'
miRNA:   3'- cccCGGACGGGGuuUGGU-GUU--UAAGG- -5'
33288 3' -52.8 NC_007605.1 + 104734 0.71 0.831947
Target:  5'- cGGGGCCuugucUGCCUCGGgucucGCCGCuAGUuggUCCa -3'
miRNA:   3'- -CCCCGG-----ACGGGGUU-----UGGUGuUUA---AGG- -5'
33288 3' -52.8 NC_007605.1 + 101414 0.67 0.963634
Target:  5'- -uGGCCagGUCCC--GCCGCugGAGUUCCu -3'
miRNA:   3'- ccCCGGa-CGGGGuuUGGUG--UUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 100371 0.67 0.972848
Target:  5'- cGGGCUgcucaUGCCCguGGgccuCCACGAAgcugUCCg -3'
miRNA:   3'- cCCCGG-----ACGGGguUU----GGUGUUUa---AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.