miRNA display CGI


Results 101 - 120 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33288 3' -52.8 NC_007605.1 + 100307 0.69 0.912067
Target:  5'- -uGGCU--CCCCcGGCCGCAAAUUCUg -3'
miRNA:   3'- ccCCGGacGGGGuUUGGUGUUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 100253 0.68 0.948234
Target:  5'- aGGGGCaCaGCaCCAAgcuccGCCACGuAUUCCc -3'
miRNA:   3'- -CCCCG-GaCGgGGUU-----UGGUGUuUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 99194 0.67 0.960128
Target:  5'- cGGGCCUcaGCaccuCCCAGGCCACcagccCCa -3'
miRNA:   3'- cCCCGGA--CG----GGGUUUGGUGuuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 98414 0.67 0.960128
Target:  5'- aGGGGuCCUGgCCCAaaauAACCACcuuAAUaUCa -3'
miRNA:   3'- -CCCC-GGACgGGGU----UUGGUGu--UUAaGG- -5'
33288 3' -52.8 NC_007605.1 + 98378 0.66 0.977969
Target:  5'- aGGGGUCgcaaaagcgGgCCCAGGCCAUgcacaugUCCu -3'
miRNA:   3'- -CCCCGGa--------CgGGGUUUGGUGuuua---AGG- -5'
33288 3' -52.8 NC_007605.1 + 98336 0.67 0.972571
Target:  5'- cGGaGCCUGCcggaguuuucuccCCCAGAUCACGGcugUCUa -3'
miRNA:   3'- cCC-CGGACG-------------GGGUUUGGUGUUua-AGG- -5'
33288 3' -52.8 NC_007605.1 + 96932 0.66 0.978901
Target:  5'- gGGGGCCUGCgcgguggagaCCCGGAUgaugaugacugacuaCugGGAcUCCu -3'
miRNA:   3'- -CCCCGGACG----------GGGUUUG---------------GugUUUaAGG- -5'
33288 3' -52.8 NC_007605.1 + 94892 0.66 0.982339
Target:  5'- -cGGCCcugccuccgGCCCCAucCCGCGAGccCCa -3'
miRNA:   3'- ccCCGGa--------CGGGGUuuGGUGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 94809 0.74 0.689301
Target:  5'- aGGGCCUGCUUCAAGCuCAUGGAgUCUu -3'
miRNA:   3'- cCCCGGACGGGGUUUG-GUGUUUaAGG- -5'
33288 3' -52.8 NC_007605.1 + 92302 0.68 0.947801
Target:  5'- aGGGCucugauuaagacaCUGCCCCGGGCCuccuacUCCa -3'
miRNA:   3'- cCCCG-------------GACGGGGUUUGGuguuuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 91934 0.72 0.796777
Target:  5'- aGGGCCgagGCCCCGcGCCuGCGGGccCCa -3'
miRNA:   3'- cCCCGGa--CGGGGUuUGG-UGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 91749 0.66 0.982339
Target:  5'- cGGGGCCUcGgCCCuGGCCuc---UUCCc -3'
miRNA:   3'- -CCCCGGA-CgGGGuUUGGuguuuAAGG- -5'
33288 3' -52.8 NC_007605.1 + 88816 0.68 0.943797
Target:  5'- uGGGCCUGUCUCcGAUUGCAGAUg-- -3'
miRNA:   3'- cCCCGGACGGGGuUUGGUGUUUAagg -5'
33288 3' -52.8 NC_007605.1 + 87775 0.75 0.668758
Target:  5'- cGGGGCCUccugccgcgggGCCUCcuGCCGCGGGgccUCCu -3'
miRNA:   3'- -CCCCGGA-----------CGGGGuuUGGUGUUUa--AGG- -5'
33288 3' -52.8 NC_007605.1 + 86383 0.67 0.960128
Target:  5'- gGGGGCCaucuaagGCCCaCGuguGACC-CAuguUUCCa -3'
miRNA:   3'- -CCCCGGa------CGGG-GU---UUGGuGUuu-AAGG- -5'
33288 3' -52.8 NC_007605.1 + 85630 0.73 0.739643
Target:  5'- uGGGGCCuaUGCCUCccACCGau-AUUCCg -3'
miRNA:   3'- -CCCCGG--ACGGGGuuUGGUguuUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 84749 0.67 0.966919
Target:  5'- --uGCCUGCCCCAgGACCugAcccucuugAAaUCCa -3'
miRNA:   3'- cccCGGACGGGGU-UUGGugU--------UUaAGG- -5'
33288 3' -52.8 NC_007605.1 + 84253 0.66 0.982137
Target:  5'- -uGGCCUGCCCgcgggcaUAGGCCAgauCAAucUCCu -3'
miRNA:   3'- ccCCGGACGGG-------GUUUGGU---GUUuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 82818 0.68 0.948234
Target:  5'- cGGGGCCUGCCauggauugaCAAAUCAaGAA--CCu -3'
miRNA:   3'- -CCCCGGACGGg--------GUUUGGUgUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 82553 0.67 0.966919
Target:  5'- -aGGcCCUGCCCuCAGGCCccCGAGUggCCu -3'
miRNA:   3'- ccCC-GGACGGG-GUUUGGu-GUUUAa-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.