miRNA display CGI


Results 81 - 100 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33288 3' -52.8 NC_007605.1 + 58567 0.7 0.899542
Target:  5'- gGGGGU--GCCCgGGGCCGCA---UCCu -3'
miRNA:   3'- -CCCCGgaCGGGgUUUGGUGUuuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 3177 0.7 0.905925
Target:  5'- uGGGGCCgGCCa-GGGCCACGGGa-CCu -3'
miRNA:   3'- -CCCCGGaCGGggUUUGGUGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 48847 0.7 0.905925
Target:  5'- cGGGCUggcgGCCCCGAAUCcggGCAGugcugCCg -3'
miRNA:   3'- cCCCGGa---CGGGGUUUGG---UGUUuaa--GG- -5'
33288 3' -52.8 NC_007605.1 + 105329 0.69 0.912067
Target:  5'- --cGCCUGCCCUccGCCAuCAGgcGUUCCc -3'
miRNA:   3'- cccCGGACGGGGuuUGGU-GUU--UAAGG- -5'
33288 3' -52.8 NC_007605.1 + 54566 0.69 0.917967
Target:  5'- aGGGCCgGUCUCGAuauccgugaACCAgcCGGGUUCCg -3'
miRNA:   3'- cCCCGGaCGGGGUU---------UGGU--GUUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 73470 0.69 0.917967
Target:  5'- cGGGGUCgggGUCCCAcguguauggGGCCGgGGGcUCCa -3'
miRNA:   3'- -CCCCGGa--CGGGGU---------UUGGUgUUUaAGG- -5'
33288 3' -52.8 NC_007605.1 + 115245 0.69 0.917967
Target:  5'- -cGGCgCUGCCCCGGAUguugCugGGGUUCUc -3'
miRNA:   3'- ccCCG-GACGGGGUUUG----GugUUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 110336 0.7 0.878983
Target:  5'- aGGGCCgucugcGCCCCcacgGGGCCACAcg--CCg -3'
miRNA:   3'- cCCCGGa-----CGGGG----UUUGGUGUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 161274 0.7 0.876814
Target:  5'- -cGGCCUgcuugcgcagcccaGCCCCGggGGCCugcaGCAGGUUCCu -3'
miRNA:   3'- ccCCGGA--------------CGGGGU--UUGG----UGUUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 132408 0.71 0.856399
Target:  5'- cGGGCCgGCCuCCuuuCCugGAAaUCCa -3'
miRNA:   3'- cCCCGGaCGG-GGuuuGGugUUUaAGG- -5'
33288 3' -52.8 NC_007605.1 + 159326 0.72 0.814702
Target:  5'- cGGGCCaGCuCCCAguaGACCACG---UCCc -3'
miRNA:   3'- cCCCGGaCG-GGGU---UUGGUGUuuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 134680 0.72 0.823413
Target:  5'- -uGGCCUccccggugGCCCCAAGCUgaGCcAGUUCCu -3'
miRNA:   3'- ccCCGGA--------CGGGGUUUGG--UGuUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 62936 0.72 0.823413
Target:  5'- cGGGGCugCUGCCCCcuccGGCC-CGGcgUCUa -3'
miRNA:   3'- -CCCCG--GACGGGGu---UUGGuGUUuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 48464 0.71 0.831947
Target:  5'- gGGGGCCgggggGCCCUgccuGAGCCGgGAuguUUUCg -3'
miRNA:   3'- -CCCCGGa----CGGGG----UUUGGUgUUu--AAGG- -5'
33288 3' -52.8 NC_007605.1 + 64153 0.71 0.831947
Target:  5'- cGGGcGCCUGCUCC--ACCGCcuuAAggCCg -3'
miRNA:   3'- -CCC-CGGACGGGGuuUGGUGu--UUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 104734 0.71 0.831947
Target:  5'- cGGGGCCuugucUGCCUCGGgucucGCCGCuAGUuggUCCa -3'
miRNA:   3'- -CCCCGG-----ACGGGGUU-----UGGUGuUUA---AGG- -5'
33288 3' -52.8 NC_007605.1 + 10007 0.71 0.840294
Target:  5'- --cGCCUGCgCagguGCCACAGGUUCCu -3'
miRNA:   3'- cccCGGACGgGguu-UGGUGUUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 161716 0.71 0.848447
Target:  5'- uGGGCCcgggaGCCCCcguCCACAAAgagggCCa -3'
miRNA:   3'- cCCCGGa----CGGGGuuuGGUGUUUaa---GG- -5'
33288 3' -52.8 NC_007605.1 + 136202 0.71 0.856399
Target:  5'- -aGGCCagcgacGCCCCGGACCuACAAAagCCg -3'
miRNA:   3'- ccCCGGa-----CGGGGUUUGG-UGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 43545 0.69 0.923622
Target:  5'- --aGCCUGCCCCcAAGuuUCGCAGGUUUCc -3'
miRNA:   3'- cccCGGACGGGG-UUU--GGUGUUUAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.