Results 101 - 120 of 286 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33288 | 3' | -52.8 | NC_007605.1 | + | 22235 | 0.69 | 0.923622 |
Target: 5'- cGGGCg-GCCCCAGagGCCG---GUUCCu -3' miRNA: 3'- cCCCGgaCGGGGUU--UGGUguuUAAGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 25304 | 0.69 | 0.923622 |
Target: 5'- cGGGCg-GCCCCAGagGCCG---GUUCCu -3' miRNA: 3'- cCCCGgaCGGGGUU--UGGUguuUAAGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 28373 | 0.69 | 0.923622 |
Target: 5'- cGGGCg-GCCCCAGagGCCG---GUUCCu -3' miRNA: 3'- cCCCGgaCGGGGUU--UGGUguuUAAGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 31442 | 0.69 | 0.923622 |
Target: 5'- cGGGCg-GCCCCAGagGCCG---GUUCCu -3' miRNA: 3'- cCCCGgaCGGGGUU--UGGUguuUAAGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 34511 | 0.69 | 0.923622 |
Target: 5'- cGGGCg-GCCCCAGagGCCG---GUUCCu -3' miRNA: 3'- cCCCGgaCGGGGUU--UGGUguuUAAGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 105329 | 0.69 | 0.912067 |
Target: 5'- --cGCCUGCCCUccGCCAuCAGgcGUUCCc -3' miRNA: 3'- cccCGGACGGGGuuUGGU-GUU--UAAGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 48847 | 0.7 | 0.905925 |
Target: 5'- cGGGCUggcgGCCCCGAAUCcggGCAGugcugCCg -3' miRNA: 3'- cCCCGGa---CGGGGUUUGG---UGUUuaa--GG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 64153 | 0.71 | 0.831947 |
Target: 5'- cGGGcGCCUGCUCC--ACCGCcuuAAggCCg -3' miRNA: 3'- -CCC-CGGACGGGGuuUGGUGu--UUaaGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 104734 | 0.71 | 0.831947 |
Target: 5'- cGGGGCCuugucUGCCUCGGgucucGCCGCuAGUuggUCCa -3' miRNA: 3'- -CCCCGG-----ACGGGGUU-----UGGUGuUUA---AGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 10007 | 0.71 | 0.840294 |
Target: 5'- --cGCCUGCgCagguGCCACAGGUUCCu -3' miRNA: 3'- cccCGGACGgGguu-UGGUGUUUAAGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 161716 | 0.71 | 0.848447 |
Target: 5'- uGGGCCcgggaGCCCCcguCCACAAAgagggCCa -3' miRNA: 3'- cCCCGGa----CGGGGuuuGGUGUUUaa---GG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 136202 | 0.71 | 0.856399 |
Target: 5'- -aGGCCagcgacGCCCCGGACCuACAAAagCCg -3' miRNA: 3'- ccCCGGa-----CGGGGUUUGG-UGUUUaaGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 132408 | 0.71 | 0.856399 |
Target: 5'- cGGGCCgGCCuCCuuuCCugGAAaUCCa -3' miRNA: 3'- cCCCGGaCGG-GGuuuGGugUUUaAGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 161274 | 0.7 | 0.876814 |
Target: 5'- -cGGCCUgcuugcgcagcccaGCCCCGggGGCCugcaGCAGGUUCCu -3' miRNA: 3'- ccCCGGA--------------CGGGGU--UUGG----UGUUUAAGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 110336 | 0.7 | 0.878983 |
Target: 5'- aGGGCCgucugcGCCCCcacgGGGCCACAcg--CCg -3' miRNA: 3'- cCCCGGa-----CGGGG----UUUGGUGUuuaaGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 61181 | 0.7 | 0.878983 |
Target: 5'- cGGGGCC-GCCgCC--ACCGCugccgUCCa -3' miRNA: 3'- -CCCCGGaCGG-GGuuUGGUGuuua-AGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 127428 | 0.7 | 0.886068 |
Target: 5'- -cGGCCcucuuccgUGCCUCGGGCCuCAAcgUCCg -3' miRNA: 3'- ccCCGG--------ACGGGGUUUGGuGUUuaAGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 158828 | 0.7 | 0.892922 |
Target: 5'- aGGGCCUGgCCgGggcuGACCGCG---UCCg -3' miRNA: 3'- cCCCGGACgGGgU----UUGGUGUuuaAGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 58567 | 0.7 | 0.899542 |
Target: 5'- gGGGGU--GCCCgGGGCCGCA---UCCu -3' miRNA: 3'- -CCCCGgaCGGGgUUUGGUGUuuaAGG- -5' |
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33288 | 3' | -52.8 | NC_007605.1 | + | 3177 | 0.7 | 0.905925 |
Target: 5'- uGGGGCCgGCCa-GGGCCACGGGa-CCu -3' miRNA: 3'- -CCCCGGaCGGggUUUGGUGUUUaaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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