miRNA display CGI


Results 81 - 100 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33288 3' -52.8 NC_007605.1 + 34693 0.68 0.952432
Target:  5'- uGGGGCC-GCCCgGGcuGCCGgGGucccUCCg -3'
miRNA:   3'- -CCCCGGaCGGGgUU--UGGUgUUua--AGG- -5'
33288 3' -52.8 NC_007605.1 + 19348 0.68 0.952432
Target:  5'- uGGGGCC-GCCCgGGcuGCCGgGGucccUCCg -3'
miRNA:   3'- -CCCCGGaCGGGgUU--UGGUgUUua--AGG- -5'
33288 3' -52.8 NC_007605.1 + 68426 0.68 0.952839
Target:  5'- uGGGCCUcaacgGCCCCcacguccugagccuuGGCCACAGgg-CCa -3'
miRNA:   3'- cCCCGGA-----CGGGGu--------------UUGGUGUUuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 154467 0.67 0.960128
Target:  5'- -cGGCCUGCgCCCGggagaaGACUAUGAG-UCCu -3'
miRNA:   3'- ccCCGGACG-GGGU------UUGGUGUUUaAGG- -5'
33288 3' -52.8 NC_007605.1 + 166982 0.67 0.960128
Target:  5'- -cGGCCUGCCCgGcucuuCUACGGAgaCCa -3'
miRNA:   3'- ccCCGGACGGGgUuu---GGUGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 34823 0.67 0.969988
Target:  5'- aGGGCCcaaagagGCCCCucuCCGCGAGg--- -3'
miRNA:   3'- cCCCGGa------CGGGGuuuGGUGUUUaagg -5'
33288 3' -52.8 NC_007605.1 + 25616 0.67 0.969988
Target:  5'- aGGGCCcaaagagGCCCCucuCCGCGAGg--- -3'
miRNA:   3'- cCCCGGa------CGGGGuuuGGUGUUUaagg -5'
33288 3' -52.8 NC_007605.1 + 110309 0.69 0.929032
Target:  5'- uGGGCCUGaCCUCGugUgGCGAGagUCCg -3'
miRNA:   3'- cCCCGGAC-GGGGUuuGgUGUUUa-AGG- -5'
33288 3' -52.8 NC_007605.1 + 100307 0.69 0.912067
Target:  5'- -uGGCU--CCCCcGGCCGCAAAUUCUg -3'
miRNA:   3'- ccCCGGacGGGGuUUGGUGUUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 75587 0.7 0.892922
Target:  5'- gGGGGUCcuugGCCCCAGAUCucucuuUAGGUgggCCa -3'
miRNA:   3'- -CCCCGGa---CGGGGUUUGGu-----GUUUAa--GG- -5'
33288 3' -52.8 NC_007605.1 + 142837 0.67 0.972848
Target:  5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3'
miRNA:   3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 142327 0.67 0.972848
Target:  5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3'
miRNA:   3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 142021 0.67 0.972848
Target:  5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3'
miRNA:   3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 141614 0.67 0.972848
Target:  5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3'
miRNA:   3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 141308 0.67 0.972848
Target:  5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3'
miRNA:   3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 169654 0.73 0.759174
Target:  5'- -cGGCCccccaUGCCCCAgcaAGCCGCAGcgacuUUCCg -3'
miRNA:   3'- ccCCGG-----ACGGGGU---UUGGUGUUu----AAGG- -5'
33288 3' -52.8 NC_007605.1 + 171300 0.72 0.815581
Target:  5'- gGGGGCCgcgggggaaggccacGCCCCcu-CCACuuuUUCCa -3'
miRNA:   3'- -CCCCGGa--------------CGGGGuuuGGUGuuuAAGG- -5'
33288 3' -52.8 NC_007605.1 + 81705 0.71 0.856399
Target:  5'- -aGGCCUGCCCCGcAGCCuguguCAGGgauggcUCCc -3'
miRNA:   3'- ccCCGGACGGGGU-UUGGu----GUUUa-----AGG- -5'
33288 3' -52.8 NC_007605.1 + 31541 0.7 0.886068
Target:  5'- uGGGGCCUggGCCCCGAGgguggcuccCCuCAGAcaUUCUu -3'
miRNA:   3'- -CCCCGGA--CGGGGUUU---------GGuGUUU--AAGG- -5'
33288 3' -52.8 NC_007605.1 + 16196 0.7 0.886068
Target:  5'- uGGGGCCUggGCCCCGAGgguggcuccCCuCAGAcaUUCUu -3'
miRNA:   3'- -CCCCGGA--CGGGGUUU---------GGuGUUU--AAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.